Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 776 a.a., RNA-binding transcriptional accessory protein from Serratia liquefaciens MT49

 Score = 46.6 bits (109), Expect = 1e-09
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 17/84 (20%)

Query: 84  VVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKV 142
           +++G + +V  FGAFV +G   DGL+HIS + D FV  DP            V++ GD V
Sbjct: 652 ILEGSVTNVTNFGAFVDIGVHQDGLVHISSLADKFVE-DPH----------TVVKAGDIV 700

Query: 143 RARIVAVSLREEKKRGSKIALTMR 166
           + +++ V L+ +     +IAL+MR
Sbjct: 701 KVKVMEVDLQRK-----RIALSMR 719