Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 772 a.a., RNA-binding transcriptional accessory protein from Erwinia tracheiphila SCR3

 Score = 50.8 bits (120), Expect = 6e-11
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 17/84 (20%)

Query: 84  VVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKV 142
           V++G + +V  FGAFV +G   DGL+HIS + D F+  DP           KV++ GD V
Sbjct: 653 VLEGAVTNVTNFGAFVNIGVHQDGLVHISSLSDKFID-DPH----------KVVKAGDIV 701

Query: 143 RARIVAVSLREEKKRGSKIALTMR 166
           + +++ V L+ +     +IALTMR
Sbjct: 702 KVKVMEVDLQRK-----RIALTMR 720