Pairwise Alignments

Query, 187 a.a., DNA-directed RNA polymerase from Methanococcus maripaludis S2

Subject, 776 a.a., Transcriptional accessory protein from Enterobacter asburiae PDN3

 Score = 48.1 bits (113), Expect = 4e-10
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 17/84 (20%)

Query: 84  VVDGEIVDVVEFGAFVRLGP-LDGLIHISQIMDDFVSFDPKREAIIGKETGKVLEKGDKV 142
           V++G + +V  FGAFV +G   DGL+HIS + D FV  DP            V++ GD V
Sbjct: 653 VLEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVE-DPH----------TVVKAGDIV 701

Query: 143 RARIVAVSLREEKKRGSKIALTMR 166
           + +++ V L+ +     +IALTMR
Sbjct: 702 KVKVLEVDLQRK-----RIALTMR 720