Pairwise Alignments

Query, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

Subject, 573 a.a., DNA polymerase III, subunit gamma and tau from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  100 bits (249), Expect = 8e-26
 Identities = 89/330 (26%), Positives = 149/330 (45%), Gaps = 28/330 (8%)

Query: 8   KYRPETLSEVVGHHEIIKRLTNYVEKKSMPH-LLFSGSPGVGKTTAALALAKDLYGDTWR 66
           KYRP     VVG   I   L N ++   +    LF G  GVGKTT A  LAK +  +   
Sbjct: 10  KYRPSNFKSVVGQQHITTTLKNAIKNNHLAQAFLFCGPRGVGKTTCARILAKTINCENLS 69

Query: 67  ENFL--------------------ELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFL 106
           ++F                     EL+++    +D IR  V D  R  P     +K+  +
Sbjct: 70  DDFEACNECESCKAFNTNSSFNVHELDAASNNSVDDIRNLV-DQVRYAP-QKGSYKIYII 127

Query: 107 DESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVE 166
           DE   L++ A NA  +T+E+      FIL+     KIIP I SRC IF F+ ++ +D+ E
Sbjct: 128 DEVHMLSTQAFNAFLKTLEEPPKYAIFILATTEKHKIIPTILSRCQIFDFNRIQIKDIAE 187

Query: 167 NLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS--DEITEEIVYKVASKA 224
           +LK I+ +E+++ E   +  I   ++G +R A+++       S  +++T           
Sbjct: 188 HLKYIASEEDISYEDEALRLIAAKADGALRDALSIFDLIVTYSAGNKLTYTETINNLHIL 247

Query: 225 RPDEIKKMTQLALNGKFVEAREQLYNLMIDWGMSGEDILIQVFREVPNLDI-SEKEKVHL 283
             D   K+T  AL  + V     +++ ++  G  G + ++ +     NL +  +   V L
Sbjct: 248 DYDYYFKVTD-ALLAESVSNVLLIFDEILKKGFDGHNFIVGLSEHFRNLMVCKDAATVEL 306

Query: 284 VEAIGECDFRIVEGSNERIQLSALLAKMGI 313
           ++       R +E S  +  LS LL+ + I
Sbjct: 307 LQVSDSAQERYIEQS-AKSNLSFLLSALNI 335