Pairwise Alignments

Query, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

Subject, 721 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Acinetobacter radioresistens SK82

 Score = 96.3 bits (238), Expect = 2e-24
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 24/228 (10%)

Query: 1   MQKPWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHL-LFSGSPGVGKTTAALALAKD 59
           M +    KYRP   +E+VG   + + LTN +E+  + H  LF+G+ GVGKTT A  LAK 
Sbjct: 1   MYQVLARKYRPRNFNELVGQSHVSRALTNALERGRLHHAYLFTGTRGVGKTTIARILAKC 60

Query: 60  LYGDTWRENF-LELNSS-----DERGIDVI------RTKVKDFARTKPIGD----AP--- 100
           L  +T   +   E+ ++     + R ID+I      RTKV+D   T+ + D    AP   
Sbjct: 61  LNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVED---TRELLDNVPYAPTQG 117

Query: 101 -FKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPL 159
            FKV  +DE   L++ + NAL +T+E+  +  +F+ +   P K+   + SRC  F   PL
Sbjct: 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPL 177

Query: 160 KTEDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAA 207
             +++ E+L  I +KE +N +   I  I   ++G +R A+++   A A
Sbjct: 178 AVDEITEHLTRILQKEEINADSDAIWQIGESAQGSLRDALSLTDQAIA 225