Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  130 bits (326), Expect = 3e-34
 Identities = 93/337 (27%), Positives = 166/337 (49%), Gaps = 24/337 (7%)

Query: 377 LAKTLKEIFDIMDHLA--EGDFSVRADENR--HKNKLQKTINHAIENVSKMMENLKSEIT 432
           +A+ LK++  +++ +A  EGD + R   +R      +    N  +  +  M+  + S + 
Sbjct: 383 IARPLKQMVAMLNDIAQGEGDLTRRLTSDRADELGAIANGFNTFLIKLQGMITQVVSSVQ 442

Query: 433 VLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYN 492
            +SD  E   +   R  +   +     +QVATA  + +A  QD +    + A+AA    +
Sbjct: 443 KVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQAAQAA----S 498

Query: 493 DAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSI---QELGEESKKINEV 549
            A+Q+    + +               DT   I  + +E+GK++   Q L ++S+ IN +
Sbjct: 499 HADQAASQGMRI-------------VRDTSTSIGALAEEIGKAVSVVQTLAKDSENINAI 545

Query: 550 TVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGI 609
              I+ +AEQT LLALNA+IEAARAG+ G+GFAVVA E+++LA++ +K+ E+I   I  +
Sbjct: 546 LTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMIQQL 605

Query: 610 NKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNT 669
            +     + +    +   D  V    +   A   I ++V     M  QI   A+  S   
Sbjct: 606 QQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSAVA 665

Query: 670 QEALRNVQDIASISEEFAATAEELTASSEEQNRAVEE 706
           ++  RNV +I  ++ E A  A+E +A+S +  +  E+
Sbjct: 666 EDINRNVINIGQVANEVAGGADESSAASADLTKLAEQ 702



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 64/361 (17%), Positives = 139/361 (38%), Gaps = 68/361 (18%)

Query: 297 IIIALFGLLIAVVISLVSSRSITKPINQLEDGVHKFGSGDYDHTINVKTGDELEELANSF 356
           ++IA  GLL+  ++    +R + + +  L D     G GD    +     DEL  +AN F
Sbjct: 366 LLIAGIGLLVIWLVGHGIARPLKQMVAMLNDIAQ--GEGDLTRRLTSDRADELGAIANGF 423

Query: 357 NKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQ------ 410
           N     + +L  M+      +  +++++ D  +H A  D ++R ++  HK  ++      
Sbjct: 424 NTF---LIKLQGMIT----QVVSSVQKVSDSSEHTA--DIAIRTNQGVHKQMVEIDQVAT 474

Query: 411 --------------------KTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKE 450
                               +  +HA +  S+ M  ++   T +    E++G+ +   + 
Sbjct: 475 AVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQT 534

Query: 451 TSEQ-------------VTDAANQVATAAADQSAKLQD-------TSDEL----EKTAKA 486
            ++              + +  N +A  AA ++A+  +        +DE+    +KT KA
Sbjct: 535 LAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKA 594

Query: 487 ADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKI 546
            + +    +Q      +V    E    + + ++    K    ++ + +++         I
Sbjct: 595 TEEIQTMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAV-------SVI 647

Query: 547 NEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTI 606
           N++   I   AE+   +A + +      G      A  A E  + + ++ K  E   R I
Sbjct: 648 NDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLI 707

Query: 607 N 607
           N
Sbjct: 708 N 708