Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 658 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  142 bits (358), Expect = 5e-38
 Identities = 136/581 (23%), Positives = 254/581 (43%), Gaps = 67/581 (11%)

Query: 187 DVLNNDHTLVDSIKASTGDESTLFLEN----YRISTSVVSGN-SRAVGTTAS--DVVYNT 239
           +VLNN+   VD  K  +G  +T+F+ +     RISTS+   + +RA+GT        Y  
Sbjct: 107 EVLNNNFEDVDEFKQMSGGVATVFVRSGEDFIRISTSLTKQDGNRAIGTVLDRQGPAYQR 166

Query: 240 VVKENTEFMGSANVVGQSFLTKYVPLKDSNGATIGMVFVG-----TPEAQFTQLVNNARN 294
           V+   T ++G A +  +S++T+Y P++DS+G  I ++F+G        AQF  L      
Sbjct: 167 VLSGQT-YIGRAVLFDRSYMTQYSPVRDSSGQVIAVLFIGFDYTDAQNAQFENLKRFRIG 225

Query: 295 NTIIIALFGLLIAVVISLVSSRSITKPINQLEDGVHKFGSGDY-------DHTINVKTGD 347
            T  +AL       ++     +++ + +  + D     G G +        ++++V    
Sbjct: 226 QTGSLALLDEQKRWLVPPAGVQALDQAVPVMLDLAKTPGKGRFWADKNEEFYSVSVPFDG 285

Query: 348 ELEELANSFNK--------------MAKDIKELHSMLDADKLSLAKTLKEIFDIM---DH 390
               +  S  K              +   +  +   + A    L   L  + D++   + 
Sbjct: 286 GPWAVVASMPKAEIRSVTWDVGIRLVIGSVLAMLLAVGATVWLLRSKLAPLGDLVRQAEA 345

Query: 391 LAEGDFSVRADENRHKN--KLQKTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRA 448
           L  GD SVR + + H    +L ++ N   E +S M+ +++     ++   + +      A
Sbjct: 346 LGAGDLSVRLNVSSHDEIGQLARSFNQMGEALSTMVSHIRKAAEEVNSRAQALSGLSGGA 405

Query: 449 KETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNS 508
            E  EQ +     +A A  + SA   + +D +  T + A               E    +
Sbjct: 406 YEGMEQQSGEITSMAGAVEEFSATSLNIADNMGSTERLAQ--------------ENAQQT 451

Query: 509 ETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNAS 568
             G   ++ A  +++ I   ++     I  LG+ S++I  +  +I  +AEQT LLALNA+
Sbjct: 452 RIGRNSMQEASSSLEHIAAALNSTATVINTLGQRSQEIGGIVGVITSIAEQTNLLALNAA 511

Query: 569 IEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVD 628
           IEAARAG+ G+GFAVVA E+++LA   +++ ++I+  I  I ++    I     G   + 
Sbjct: 512 IEAARAGEQGRGFAVVADEVRNLASRTREATDEISGMIQSIQQETGNAISTMERGNVLMQ 571

Query: 629 RGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAA 688
            G+    +V SA  +I E   ++ +  A I    +  S+       N+Q IA        
Sbjct: 572 EGLSRNADVASALARIDEQSRSAGQQFAAITTATQEQSSTATLLSSNLQSIA-------- 623

Query: 689 TAEELTASSEEQNRAVEEIDASAEKMMEISRKLAEDADEFK 729
                  ++ EQ   V  +  +A+++  ++  L  + D F+
Sbjct: 624 ------LANSEQREVVSNLAITAKELETLAAGLRHEVDRFR 658