Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 639 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  135 bits (340), Expect = 6e-36
 Identities = 112/411 (27%), Positives = 175/411 (42%), Gaps = 71/411 (17%)

Query: 292 ARNNTIIIALFGLLIAVVISLVSSRSITKPINQLEDGVHKFGSGDYDHTINVKTGDELEE 351
           AR+  +I  L  LL+ V+ +LV +R IT+PI +    V +  SGD  H I V   DEL  
Sbjct: 286 ARSLQLISTLLALLVGVIAALVITRQITRPIQETLAVVERIASGDLSHNIQVTRRDELGV 345

Query: 352 LANSFNKMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQK 411
           L     +M   ++EL                 I  I D + +                  
Sbjct: 346 LQQGIQRMGTTLREL-----------------ISGIRDGVTQ------------------ 370

Query: 412 TINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSA 471
            I  A E +S + E   + +     E + V   +     T ++V   A Q + AAAD   
Sbjct: 371 -IASAAEELSAVTEQTSAGVNSQKIETDQVATAMHEMTATVQEVARNAEQASLAAADADG 429

Query: 472 KLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDE 531
           +           A+A D V  +A                 + ++E     + + T+ +  
Sbjct: 430 Q-----------ARAGDKVVAEA-----------------IAQIERLAAEVARSTDAMTH 461

Query: 532 LGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSL 591
           L +   ++G        V  +IK VAEQT LLALNA+IEAARAG+AG+GFAVVA E++ L
Sbjct: 462 LQQESNKIG-------SVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGL 514

Query: 592 AEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETS 651
           A+  +KS E+I   + G+    +   ++    R   D  V    +   +   I  +V   
Sbjct: 515 AQRTQKSTEEIEGLVAGLQNGTQQVANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNI 574

Query: 652 AKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNR 702
             M  QI   A+  S   +E  R++ ++  +SE+ A  ++E   SS E  R
Sbjct: 575 QSMNQQIAAAAEQQSAVAEEISRSIVNVRDVSEQTATASDETAKSSVELAR 625