Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 635 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  133 bits (335), Expect = 2e-35
 Identities = 92/322 (28%), Positives = 165/322 (51%), Gaps = 12/322 (3%)

Query: 381 LKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSDELED 440
           L++   + + +AEGD S    + R K++L + + H++   ++M  NL+  I  +SD  + 
Sbjct: 312 LRKALSVANRIAEGDLSHEV-QTRRKDELGQ-LQHSM---TQMTLNLRGLIGNISDNAQQ 366

Query: 441 VGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDS 500
           +          +E+++    Q     ++Q  + +  +  + +    A  V   AEQ+  +
Sbjct: 367 IASA-------AEELSTITEQTRAGVSNQREETEQVAAAMNQMLATAQEVARHAEQASIA 419

Query: 501 AIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQT 560
           A +    ++ G + V + +  ++ + + +    +++  L  ES+KI  V  +IK V++QT
Sbjct: 420 AGQANHQTDLGDQVVTDVVAQIEHLAHEMARSSQAMLALQRESQKIGSVLDVIKSVSQQT 479

Query: 561 GLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLG 620
            LLALNA+IEAARAG+AG+GFAVVA E++SLA+  ++S E+I   I G++   +   D+ 
Sbjct: 480 NLLALNAAIEAARAGEAGQGFAVVADEVRSLAQRTQQSAEEIEELIGGLHSGTQQVADIL 539

Query: 621 LAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIA 680
              R   D  V        A  +I  +V    +M  QI   A+  S   +E  R+V  + 
Sbjct: 540 DYSRTLTDNSVGLARNAGDALSEIARTVLVIQEMNPQIAAAAEEQSAVAEEINRSVLKVR 599

Query: 681 SISEEFAATAEELTASSEEQNR 702
             SE+ AA +E+  A+S E  R
Sbjct: 600 DASEQTAAASEQTAAASIELAR 621



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 78/384 (20%), Positives = 159/384 (41%), Gaps = 53/384 (13%)

Query: 353 ANSFNKMAKDIKELHSMLDA--DKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNK-- 408
           ANS N+++  ++++   L A  ++L   K ++ + ++    A  + +++   +  K +  
Sbjct: 76  ANSLNRLSASMEKIDGHLKALSNRLIAPKPIEYLQEMARIGATFNTTLKDVPSLVKTREN 135

Query: 409 LQKTINHAIENVSKMMENLKSEITVLSDELE-DVGEGLKRAKETSEQVTDAANQVATAAA 467
            ++ +  +      ++  L S++    DE   D  E L++A E +E   D A   A AA+
Sbjct: 136 TREELKQSSTRTGDVLAQLASDLPDQEDEKALDAVENLRQAIEQAE---DRAQSPAWAAS 192

Query: 468 DQSAKLQDTSD---ELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQK 524
              A  Q  +D    LE    A   +  D+    ++ +E++    T + +++ A  T +K
Sbjct: 193 SLDAYAQAVNDAERNLELAQAAVAKLPVDSTALKNAVLEIR----TRLTRLKEAQLTTEK 248

Query: 525 ITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVV 584
             N +++  +  Q LG+      + T      AEQ     L  +  A   G       V+
Sbjct: 249 SQNQLEQ--QLDQLLGQSDLLSQDQTQRRDHEAEQARTQTLGVTAAALLLGVLAAW--VI 304

Query: 585 ASEIKSLAEEIKKSVEDINRTING-INKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMK 643
           A +I +    ++K++   NR   G ++ +V+T                   DE+      
Sbjct: 305 AGQIVT---PLRKALSVANRIAEGDLSHEVQTRRK----------------DELGQLQHS 345

Query: 644 IKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRA 703
           + +       +I  I DNA              Q IAS +EE +   E+  A    Q   
Sbjct: 346 MTQMTLNLRGLIGNISDNA--------------QQIASAAEELSTITEQTRAGVSNQREE 391

Query: 704 VEEIDASAEKMMEISRKLAEDADE 727
            E++ A+  +M+  ++++A  A++
Sbjct: 392 TEQVAAAMNQMLATAQEVARHAEQ 415