Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 768 a.a., twitching motility protein PilJ from Variovorax sp. SCN45

 Score =  140 bits (353), Expect = 2e-37
 Identities = 97/373 (26%), Positives = 180/373 (48%), Gaps = 27/373 (7%)

Query: 341 INVKTGDELEELANSFNKMAKDIKELHSMLD-ADKLSLAKTLKEIFDIMDHLAEGDFSVR 399
           + V+ G E   +A      A+   E    ++ A++ ++ + + E+  +    AEGD +  
Sbjct: 408 VQVREGRERAAVAERERLAAEQASEEAGRVNNANQAAILRLMNELQTV----AEGDLTQE 463

Query: 400 ADENRH-KNKLQKTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDA 458
           A         +  ++N+ +E +  ++ N+++  T              R  +T+ QV   
Sbjct: 464 ATVTEDITGAIADSVNYTVEELRLLVGNVQNTAT--------------RVAQTTSQVEST 509

Query: 459 ANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENA 518
           + ++  A+ +Q  ++++T   +   A+  + V + A++S   A +    + +G++ V+NA
Sbjct: 510 STELLAASTEQLREIRETGQSVLTMAERINGVSSQAQESATVARQSLQAASSGLQAVQNA 569

Query: 519 IDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAG 578
           I  M  I + I E  K I+ LGE S++I E+T LI D+ EQT +LALNA+I+AA AG+AG
Sbjct: 570 IGGMNSIRDQIQETSKRIKRLGESSQEIGEITELISDITEQTNVLALNAAIQAASAGEAG 629

Query: 579 KGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVN 638
           +GF+VVA E++ LAE    +   I+  +  I    +  +         V  G    D   
Sbjct: 630 RGFSVVAEEVQRLAERSADATRQISALVKAIQTDTQDAVGAMERSTQGVVEGAKLSDNAG 689

Query: 639 SAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEE-------FAATAE 691
           +A  +I       A +I QI  +A   +++      N+Q I +++E+        A    
Sbjct: 690 TALSEIDRVSRRLADLIEQISQSASREADSANVVAANIQHIFAVTEQTGEGTRTTAQQVR 749

Query: 692 ELTASSEEQNRAV 704
           EL+  +EE  R+V
Sbjct: 750 ELSQMAEELRRSV 762