Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 658 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  152 bits (384), Expect = 5e-41
 Identities = 145/560 (25%), Positives = 251/560 (44%), Gaps = 59/560 (10%)

Query: 189 LNNDHTLVDSIKASTGDESTLFLEN----YRISTSVVSGN-SRAVGTTAS--DVVYNTVV 241
           LNND T VD  ++ T   +T+F+ +     RISTS+   + +RA+GT        Y  ++
Sbjct: 109 LNNDFTEVDEFRSMTAGVATIFVRSGDDFIRISTSLSKQDGTRAIGTVLDRKGAAYERLI 168

Query: 242 KENTEFMGSANVVGQSFLTKYVPLKDSNGATIGMVFVG-----TPEAQFTQLVNNARNNT 296
              + ++G A +  + ++T+Y P++DS+G  I  +FVG       + QF  L +    +T
Sbjct: 169 AGQS-YVGKAVLFDRYYMTQYSPVRDSSGKIIAALFVGFDYTDAQKTQFDNLKSFRIGST 227

Query: 297 IIIALF---GLLIAVVISLVSSRSITKPINQL--EDGVHKFGSGDYDHTINVK---TGDE 348
             +AL    G  +     + S     K + +L  + G  +F     D+  +V     G  
Sbjct: 228 GSLALLDDKGTWLVPPAGVKSLEGAAKSVAELASKPGKAQFWDDGDDNYYSVGQPFAGGP 287

Query: 349 LEELANSFNKMAKDIK--------------ELHSMLDADKL--SLAKTLKEIFDIMDHLA 392
              +A+   K   ++                L +++ A  L  S  + L E+    D L 
Sbjct: 288 WTVIASMPRKEISEVTWHVGTQLAIGSLLAMLIAVISAIWLLRSKLRPLSELVRQADALG 347

Query: 393 EGDFSVRAD--ENRHKNKLQKTINHAIENVSKMMENLKS---EITVLSDELEDVGEGLKR 447
            GD SVR +   N    +L  + N   E +S M+ ++++   E++  ++ L  +  G   
Sbjct: 348 AGDLSVRLNVTSNDEIGQLSGSFNKMSEALSSMVSHIRTAAQEVSTRANVLSGLSGG--- 404

Query: 448 AKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDN 507
           A E  EQ +     +A A  + SA   + +D +  T + A               E    
Sbjct: 405 AFEGMEQQSGEITSMAGAVEEFSATSMNIADNMGNTERLAQ--------------ENAQQ 450

Query: 508 SETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLLALNA 567
           +  G   +E A  ++Q+I   +    K I  LG+ S++I  +  +I  +A+QT LLALNA
Sbjct: 451 TRIGRTSMEEASSSLQQIATSLSSTAKVIDTLGQRSQEIGSIVGVITSIADQTNLLALNA 510

Query: 568 SIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEV 627
           +IEAARAG+ G+GFAVVA E++SLA   +++ ++I+  I  I ++    I     G   +
Sbjct: 511 AIEAARAGEQGRGFAVVADEVRSLASRTREATDEISGMIASIQQETGNAISTMQQGNTLM 570

Query: 628 DRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFA 687
             G+    +V SA  +I E   ++    A I    +  S+       N+Q IA  + E  
Sbjct: 571 QEGLSLNAKVASALAQIDEQSRSAGHQFAAITTATQEQSSTATMLSSNLQSIAMANSEQR 630

Query: 688 ATAEELTASSEEQNRAVEEI 707
                L  +++E N    E+
Sbjct: 631 QVMSNLAITAQELNGLATEL 650



 Score = 73.2 bits (178), Expect = 4e-17
 Identities = 71/386 (18%), Positives = 166/386 (43%), Gaps = 55/386 (14%)

Query: 267 DSNGATIGMVFVG--------TPEAQFTQLVNNARNNTIIIALFGLLIAVVISLVSSRSI 318
           D N  ++G  F G         P  + +++  +      I +L  +LIAV+ ++   RS 
Sbjct: 273 DDNYYSVGQPFAGGPWTVIASMPRKEISEVTWHVGTQLAIGSLLAMLIAVISAIWLLRSK 332

Query: 319 TKPINQLEDGVHKFGSGDYDHTINVKTGDELEELANSFNKMAKDIKELHSML-------- 370
            +P+++L       G+GD    +NV + DE+ +L+ SFNKM++ +  + S +        
Sbjct: 333 LRPLSELVRQADALGAGDLSVRLNVTSNDEIGQLSGSFNKMSEALSSMVSHIRTAAQEVS 392

Query: 371 --------------------DADKLSLAKTLKEIFDIMDHLAE--GDFSVRADENRHKNK 408
                                 +  S+A  ++E      ++A+  G+    A EN  + +
Sbjct: 393 TRANVLSGLSGGAFEGMEQQSGEITSMAGAVEEFSATSMNIADNMGNTERLAQENAQQTR 452

Query: 409 LQKTINHAIENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAAD 468
           + +T   ++E  S  ++ + + ++  +  ++ +G+  +        +T  A+Q    A +
Sbjct: 453 IGRT---SMEEASSSLQQIATSLSSTAKVIDTLGQRSQEIGSIVGVITSIADQTNLLALN 509

Query: 469 QSAKLQDTSDELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNV 528
            + +     ++    A  AD V + A ++ ++  E+     +  ++  NAI TMQ+   +
Sbjct: 510 AAIEAARAGEQGRGFAVVADEVRSLASRTREATDEISGMIASIQQETGNAISTMQQGNTL 569

Query: 529 IDE-------LGKSIQELGEESKKINEVTVLIKDVAEQTGLLA--LNASIEAARAGDAGK 579
           + E       +  ++ ++ E+S+        I    ++    A  L++++++    ++ +
Sbjct: 570 MQEGLSLNAKVASALAQIDEQSRSAGHQFAAITTATQEQSSTATMLSSNLQSIAMANSEQ 629

Query: 580 -----GFAVVASEIKSLAEEIKKSVE 600
                  A+ A E+  LA E++  V+
Sbjct: 630 RQVMSNLAITAQELNGLATELRHEVD 655