Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 645 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  129 bits (325), Expect = 4e-34
 Identities = 124/574 (21%), Positives = 243/574 (42%), Gaps = 88/574 (15%)

Query: 126 LDSTILKVSKSSEKSG-FEKIPEQTALKFSDADVTGTDSALSIVVAYPIYDDAGTLGYVA 184
           LD T+   S+S+ K   F    +  A +F + D+ G    L++ + Y +  +   +G   
Sbjct: 127 LDRTL---SRSNPKDKWFYGYIDSGAERFINIDIDGATGELALFIDYRVEKEGKLVGVAG 183

Query: 185 FIDVLNNDHTLVDSIKASTGDESTLFLENYRISTSV-----VSGNSRAVGTTASDVVYNT 239
               +     L+     S G+   +FL        V      SG  +      +D     
Sbjct: 184 MGLRMTELSKLIHDF--SFGEHGKVFLVRNDGLIQVHPDAAFSGKRQLAEQLGADAAKGV 241

Query: 240 VVKENTEFMGSANVVGQSFLTKYVPLKDSNGATIGMVFVGTPEAQFTQLVNNARNNTIII 299
           +    +      +  G+ +L   +PL+D N   +  V    PE++    ++ A   T +I
Sbjct: 242 MTGGESLRSSRFSRDGERYLALGLPLRDLNWTLVAEV----PESEIYAQMHQAVWLTSLI 297

Query: 300 ALFGLLIAVVISLVSSRSITKPINQLEDGVHKFGSG--DYDHTINVKTGDELEELANSFN 357
                L+++++ ++ +R + +PI ++   + + GSG  D  H ++    DEL +LA  FN
Sbjct: 298 GGAVALVSLLLVVLLARGLVRPIRRVTAALVQIGSGAGDLSHRLDDSRQDELGDLARGFN 357

Query: 358 KMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAI 417
           +           LD+ +  + + L                             + +  A+
Sbjct: 358 R----------FLDSQRSLIGEVL--------------------------STSERLRRAV 381

Query: 418 ENVSKMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTS 477
           E V+++++N                       E S +  +    VATA  +    +QD +
Sbjct: 382 EQVTQVVDN---------------------TAERSGRQQEMTEMVATAVHEMGLTVQDIA 420

Query: 478 DELEKTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQ 537
                 A+A       ++ + D A++ ++  +  ++ +E        ++  I +   ++ 
Sbjct: 421 RNAGDAAQA-------SQSARDEALQAREVVQRSIRGIEG-------MSGDIGKAADAVS 466

Query: 538 ELGEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKK 597
           +L +E   ++EV  +I+ ++EQT LLALNA+IEAARAG+ G+GFAVVA E+++LA   + 
Sbjct: 467 QLADEVASVDEVLAVIRSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLARRTQL 526

Query: 598 SVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQ 657
           S +++ + I  +     + +    AG+     GV +     ++   I + VE  + M  Q
Sbjct: 527 STDEVQQMIQRLKLGAGSAVSSMQAGQQATGSGVESSQRTGASLSAITDQVEHISDMNHQ 586

Query: 658 IKDNAKNASNNTQEALRNVQDIASISEEFAATAE 691
           +    +  S  T+E  R VQ I+ ++ E AA  +
Sbjct: 587 VATATEEQSAVTEEINRTVQGISDLARETAAEVQ 620



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 575 GDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAGRDEVDRGVVAI 634
           GD  +GF       +SL  E+  + E + R +  + + V+ T +     ++  +    A+
Sbjct: 350 GDLARGFNRFLDSQRSLIGEVLSTSERLRRAVEQVTQVVDNTAERSGRQQEMTEMVATAV 409

Query: 635 DEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQD-----------IASIS 683
            E+      I  +   +A+     +D A  A    Q ++R ++            ++ ++
Sbjct: 410 HEMGLTVQDIARNAGDAAQASQSARDEALQAREVVQRSIRGIEGMSGDIGKAADAVSQLA 469

Query: 684 EEFAATAEELT---ASSEEQNRAVEEIDASAEKMMEISRKLAEDADEFKT 730
           +E A+  E L    + SE+ N         A +  E+ R  A  ADE +T
Sbjct: 470 DEVASVDEVLAVIRSISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRT 519