Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 748 a.a., twitching motility protein PilJ from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  145 bits (367), Expect = 6e-39
 Identities = 100/351 (28%), Positives = 181/351 (51%), Gaps = 34/351 (9%)

Query: 371 DADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRH-KNKLQKTINHAIENVSKMMENLKS 429
           DA++ ++ + + E+  +    AEGD +  A         +  ++N+ +E +  ++ N+++
Sbjct: 419 DANQAAILRLMNELQTV----AEGDLTQEATVTEDITGAIADSVNYTVEELRSLVGNVQA 474

Query: 430 EITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADM 489
             T              R  +T+  V   + ++  A+ +Q  ++++T   +   A+  + 
Sbjct: 475 TAT--------------RVAQTTSAVESTSTELLAASTEQLREIRETGQSVLDMAQRINQ 520

Query: 490 VYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEV 549
           V   A++S   A      +E+G++ V++AI  M  I + I E  K I+ LGE S++I E+
Sbjct: 521 VSGQAQESATVARASLQAAESGLQAVQDAIGGMNAIRDQIQETSKRIKRLGESSQEIGEI 580

Query: 550 TVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGI 609
           T LI D+ EQT +LALNA+I+AA AG+AG+GF+VVA E++ LAE       D  R I+ +
Sbjct: 581 TELISDITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAER----SADATRQISAL 636

Query: 610 NKKVETTIDLGLAGRDEVDRGVV----AIDEVNSAFMKIKESVETSAKMIAQIKDNAKNA 665
            K ++T     +A  +   +GVV      D   +A  +I       A++I QI D A   
Sbjct: 637 VKAIQTDTQDAVAAMERSTQGVVEGAKLSDNAGTALSEIDRVSRRLAELIEQISDAASRE 696

Query: 666 SNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEKMME 716
           +++  E   N+Q I +++E+      E T S+ +Q   V E+ A AE++ +
Sbjct: 697 ADSANEVAGNIQHIFAVTEQ----TGEGTRSTAQQ---VRELSAMAEELRQ 740



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 36/314 (11%)

Query: 435 SDELEDVGEGLKRAKETSEQVTDAANQVATAAAD------QSAKLQDTSDELEKTAKAAD 488
           S + + V E  + A E+ +Q     N    AA        Q+    D + E   T     
Sbjct: 393 SRQRQSVAESQRLAAESQQQDAKRVNDANQAAILRLMNELQTVAEGDLTQEATVTEDITG 452

Query: 489 MVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKI-TNVIDELGKSIQELGEESKKIN 547
            + +    +V+    +  N +    +V      ++   T ++    + ++E+ E  + + 
Sbjct: 453 AIADSVNYTVEELRSLVGNVQATATRVAQTTSAVESTSTELLAASTEQLREIRETGQSVL 512

Query: 548 EVTVLIKDVAEQT--GLLALNASIEAARAG-----DAGKGFAVVASEIKSLAEEIKK--- 597
           ++   I  V+ Q         AS++AA +G     DA  G   +  +I+  ++ IK+   
Sbjct: 513 DMAQRINQVSGQAQESATVARASLQAAESGLQAVQDAIGGMNAIRDQIQETSKRIKRLGE 572

Query: 598 SVEDINRTINGINKKVETTIDLGL------AGRDEVDRGVVAIDEVNSAFMKIKESVETS 651
           S ++I      I+   E T  L L      A   E  RG   + E      +++   E S
Sbjct: 573 SSQEIGEITELISDITEQTNVLALNAAIQAASAGEAGRGFSVVAE------EVQRLAERS 626

Query: 652 AKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASA 711
           A    QI    K    +TQ+A+       +  E       E    S+    A+ EID  +
Sbjct: 627 ADATRQISALVKAIQTDTQDAV-------AAMERSTQGVVEGAKLSDNAGTALSEIDRVS 679

Query: 712 EKMMEISRKLAEDA 725
            ++ E+  ++++ A
Sbjct: 680 RRLAELIEQISDAA 693