Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 795 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  128 bits (321), Expect = 1e-33
 Identities = 112/404 (27%), Positives = 173/404 (42%), Gaps = 57/404 (14%)

Query: 303 GLLIAVVISLVSSRSITKPINQLEDGVHKFGSGDYDHTIN-VKTGDELEELANSFNKMAK 361
           G  I VVI  + +RSI  PI  +   + +    +   T+     GDEL  +A S      
Sbjct: 293 GFAIMVVIGTLIARSIYGPITAMTGVMGELAGDNLSVTVPFTDRGDELGGMAKSVGHFK- 351

Query: 362 DIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVS 421
                      D+L   + L+   +     AE      AD      KL  T   ++  V 
Sbjct: 352 -----------DQLIRVRQLEAAQEEQKRRAE------ADRLAAMRKLADTFEGSVGKVI 394

Query: 422 KMMENLKSEITVLSDELEDVGEGLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELE 481
           + + +  +E+   S ++         A ETS Q T     VA+AA   S  +Q  +   E
Sbjct: 395 ETVTSAATELEAASGQMAGT------ATETSSQATT----VASAAQQASTNVQTVASATE 444

Query: 482 KTAKAADMVYNDAEQSVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGE 541
           + A +   + +  E+S   +    D + T          TMQ            +Q L  
Sbjct: 445 ELASSIKEIAHQVERSQAVSHHAGDEAHT---------TTMQ------------VQALSA 483

Query: 542 ESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVED 601
              KI E+  LI D+A QT LLALNA+IEAARAG+AGKGFAVVA E+K LA +  K+  +
Sbjct: 484 NVGKIGEIVKLINDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKDLANQTAKATSE 543

Query: 602 INRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDN 661
           I   I  +       +       + + + +  + E++SA   +  +VE       +I  N
Sbjct: 544 IAGQIQAVQDSTRVAVH----AIESISKVIAEMGEISSA---VAAAVEQQTAATGEIARN 596

Query: 662 AKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVE 705
            + A+  TQE  RN+  +   ++E    AE++  SS E +R  E
Sbjct: 597 VEQAAEGTQEVTRNIVSVEQAAKETGQAAEQIRESSGELSRQAE 640



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 11/180 (6%)

Query: 540 GEESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSV 599
           G   K I  VT    ++   +G +A  A+  +++A       A  A +  +  + +  + 
Sbjct: 388 GSVGKVIETVTSAATELEAASGQMAGTATETSSQATTV----ASAAQQASTNVQTVASAT 443

Query: 600 EDINRTINGINKKVETTIDLGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIK 659
           E++  +I  I  +VE +  +     DE     + +  +++   KI E V+    + +Q  
Sbjct: 444 EELASSIKEIAHQVERSQAVSHHAGDEAHTTTMQVQALSANVGKIGEIVKLINDIASQTN 503

Query: 660 DNAKNASNNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEKMMEISR 719
             A NA   T EA R         + FA  A E+   + +  +A  EI    + + + +R
Sbjct: 504 LLALNA---TIEAAR----AGEAGKGFAVVAGEVKDLANQTAKATSEIAGQIQAVQDSTR 556



 Score = 30.4 bits (67), Expect = 4e-04
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 634 IDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEEL 693
           I+ V SA  +++ +    A    +    A   ++  Q+A  NVQ +AS +EE A+     
Sbjct: 394 IETVTSAATELEAASGQMAGTATETSSQATTVASAAQQASTNVQTVASATEELAS----- 448

Query: 694 TASSEEQNRAVEEIDASAEKMMEISRKLAEDA 725
                    +++EI    E+   +S    ++A
Sbjct: 449 ---------SIKEIAHQVERSQAVSHHAGDEA 471