Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 570 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  181 bits (459), Expect = 9e-50
 Identities = 158/582 (27%), Positives = 263/582 (45%), Gaps = 78/582 (13%)

Query: 148 QTALKFSDADVTGTDSALSIVVAYPIYDDAGTLGYVAFIDVLNNDHTL------VDSIKA 201
           ++ L  S AD        ++ VA+ +    GT   VA   +L  DH L      VD IKA
Sbjct: 44  RSLLHASAADAARERVETNMKVAWDVLKSKGTAFSVADGKILAGDHVLNGNFDVVDKIKA 103

Query: 202 STGDESTLFLENYRISTSVVSGN-SRAVGTT-ASDVVYNTVVKENTEFMGSANVVGQSFL 259
             G  +T+F+ + R++T+V+  + SRAVGT  A    Y  V    T F G   ++G+ ++
Sbjct: 104 LVGGSATVFMGDTRVTTNVIKPDGSRAVGTQLAKTAAYEAVFGRKTSFRGEVEILGEPYM 163

Query: 260 TKYVPLKDSNGATIGMVFVGTPEAQFTQLVNNARNNTI-IIALFGLLIAVVISLVSSRSI 318
           T Y P+ D  G  IG+++VG  +A F           + +  L G L  +V   ++ R++
Sbjct: 164 TAYDPILDGAGNVIGVLYVGIKKADFLVAAERTLQLMVGVTVLVGALSILVSWTIAKRNL 223

Query: 319 TKPINQLEDGVHKFGSGDYDHTI-NVKTGDELEELANSFNKMAKDIKELHSMLDADKLSL 377
             P+ +    +     G+ D  I + +  DE+ E+  +  ++ K+  +    L+A     
Sbjct: 224 ATPLKRSILAMRDLADGNLDVAIRHTERRDEIGEMIRAL-EIFKENGQARHRLEA----- 277

Query: 378 AKTLKEIFDIMDHLAEGDFSVRADENRHKNKLQKTINHAIENVSKMMENLKSEITVLSDE 437
                                +A E   +N+ Q+ I     + +  +  + + +T  +  
Sbjct: 278 --------------------AQAAEQAARNRRQEAIERLTTDFNSSVFAVLNGVTESAHH 317

Query: 438 LEDVGEGLKR-AKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQ 496
           L D  + +   A++TS Q T     V  AAA+Q+      S  +E  A A       AEQ
Sbjct: 318 LRDSAQSMTSVAEDTSRQST-----VVAAAAEQA------SVNVETVAAA-------AEQ 359

Query: 497 SVDSAIEVKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDV 556
              S  E+        ++V N+ +   + +   + +   +  L E + +I +V  LI D+
Sbjct: 360 LAASEHEI-------ARQVANSSEISHRASEEAERVNSIVLSLSEATNRIGQVVTLINDI 412

Query: 557 AEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETT 616
           A QT LLALNA+IEAARAGDAGKGFAVVA+E+K LA +  ++ EDI   IN +       
Sbjct: 413 AAQTNLLALNATIEAARAGDAGKGFAVVANEVKHLATQTARATEDIVVQINSVQAVTRDA 472

Query: 617 ID-LGLAGRDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRN 675
           +  +G  G          I  ++ +   I  +VE      A+I  N + AS+ T+E   +
Sbjct: 473 VSAIGGIGH--------TISSISESASAIASAVEEQTAATAEIARNVQEASSGTREVTSS 524

Query: 676 VQDI-------ASISEEFAATAEELTASSEEQNRAVEEIDAS 710
           +  +        S + +   TA+EL+  SE+    V E  A+
Sbjct: 525 ITLVNQGAATTGSAAHQLLGTADELSQQSEQLATEVSEFLAA 566



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 636 EVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAATAEELTA 695
           + NS+   +   V  SA     ++D+A++ ++  ++  R    +A+ +E+ +   E + A
Sbjct: 299 DFNSSVFAVLNGVTESAH---HLRDSAQSMTSVAEDTSRQSTVVAAAAEQASVNVETVAA 355

Query: 696 SSEEQNRAVEEIDASAEKMMEISRKLAEDAD 726
           ++E+   +  EI        EIS + +E+A+
Sbjct: 356 AAEQLAASEHEIARQVANSSEISHRASEEAE 386



 Score = 29.3 bits (64), Expect = 6e-04
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 634 IDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASISEEFAAT---- 689
           ++ V  +   +++S ++   +       +   +   ++A  NV+ +A+ +E+ AA+    
Sbjct: 308 LNGVTESAHHLRDSAQSMTSVAEDTSRQSTVVAAAAEQASVNVETVAAAAEQLAASEHEI 367

Query: 690 AEELTASSEEQNRAVEEIDASAEKMMEISRKLAE 723
           A ++  SSE  +RA EE    AE++  I   L+E
Sbjct: 368 ARQVANSSEISHRASEE----AERVNSIVLSLSE 397