Pairwise Alignments

Query, 731 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 682 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  130 bits (328), Expect = 2e-34
 Identities = 110/444 (24%), Positives = 206/444 (46%), Gaps = 67/444 (15%)

Query: 303 GLLIAVVISL-VSSRSITKPINQLEDGVHKFGSGDYDHTIN-VKTGDELEELANS---FN 357
           G+L      L + +R ++ PI ++ + ++    G+ D  +  +   DE+ E+A +   F 
Sbjct: 193 GILAGAAFGLYIGARQLSAPIRRVSEVMNAVADGNLDADVPYLGQNDEIGEMAAAVEVFK 252

Query: 358 KMAKDIKELHSMLDADKLSLAKTLKEIFDIMDHLAEGDFSVR-----ADENRHK-----N 407
           K  ++++ +++   A +         +  ++D  A GDFS R      D+N ++     N
Sbjct: 253 KNGREVRRMNAQETAMRAKSDDLQAGMAVVVDAAAGGDFSRRINKDYGDDNLNRFATTIN 312

Query: 408 KLQKTINHAIENVSKMMENL-KSEIT---------VLSDELEDVGEGLKRAKET------ 451
            L   +++ +   S+++E L + ++T         V ++  E+V + L + +ET      
Sbjct: 313 ALLIGVDNGVSETSRVIEGLARGDLTEKMDGDFRGVFAELKENVNQTLTKLRETMREVRG 372

Query: 452 -SEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQSVDSA-------IE 503
            +E ++  AN++ +AA D S + +  +  LE+T+ A D +      S D A        E
Sbjct: 373 STEGISGNANELRSAADDLSKRTEQQAAALEETSAALDEITAVVRNSTDRAQEASAMVAE 432

Query: 504 VKDNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVAEQTGLL 563
            K  +E     V +A+  M +I +               S++I+++  +I ++A QT LL
Sbjct: 433 TKQKTEESASVVRDAVSAMDRIEHA--------------SREISQIINVIDEIAFQTNLL 478

Query: 564 ALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGINKKVETTIDLGLAG 623
           ALNA +EAARAG+AGKGFAVVA E++ LA+    + +DI   I                 
Sbjct: 479 ALNAGVEAARAGEAGKGFAVVAQEVRELAQRSATAAKDIKALIT--------------KS 524

Query: 624 RDEVDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNASNNTQEALRNVQDIASIS 683
            +EV RGV  +    SA  +I+  V    + I  I   A+  S    E    +  +  ++
Sbjct: 525 GEEVGRGVSLVQRTGSALSEIETRVLAINEHIHSIATAAREQSTGLHEVNTAINQMDEVT 584

Query: 684 EEFAATAEELTASSEEQNRAVEEI 707
           +  AA  EE +A++ + +   + +
Sbjct: 585 QRNAAMVEETSAATHKLSSEADHL 608



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 47/303 (15%), Positives = 119/303 (39%), Gaps = 20/303 (6%)

Query: 444 GLKRAKETSEQVTDAANQVATAAADQSAKLQDTSDELEKTAKAADMVYNDAEQ-----SV 498
           G ++      +V++  N VA    D        +DE+ + A A ++   +  +     + 
Sbjct: 205 GARQLSAPIRRVSEVMNAVADGNLDADVPYLGQNDEIGEMAAAVEVFKKNGREVRRMNAQ 264

Query: 499 DSAIEVK-DNSETGVKKVENAIDTMQKITNVIDELGKSIQELGEESKKINEVTVLIKDVA 557
           ++A+  K D+ + G+  V +A         +  + G     L   +  IN + + + +  
Sbjct: 265 ETAMRAKSDDLQAGMAVVVDAAAGGDFSRRINKDYGDD--NLNRFATTINALLIGVDNGV 322

Query: 558 EQTGLLA---LNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGIN---K 611
            +T  +        +     GD    FA +   +     ++++++ ++  +  GI+    
Sbjct: 323 SETSRVIEGLARGDLTEKMDGDFRGVFAELKENVNQTLTKLRETMREVRGSTEGISGNAN 382

Query: 612 KVETTIDLGLAGRDE-----VDRGVVAIDEVNSAFMKIKESVETSAKMIAQIKDNAKNAS 666
           ++ +  D  L+ R E     ++    A+DE+ +      +  + ++ M+A+ K   + ++
Sbjct: 383 ELRSAAD-DLSKRTEQQAAALEETSAALDEITAVVRNSTDRAQEASAMVAETKQKTEESA 441

Query: 667 NNTQEALRNVQDIASISEEFAATAEELTASSEEQNRAVEEIDASAEKMMEISRKLAEDAD 726
           +  ++A+  +  I   S E +     +   + + N         A +  E  +  A  A 
Sbjct: 442 SVVRDAVSAMDRIEHASREISQIINVIDEIAFQTNLLALNAGVEAARAGEAGKGFAVVAQ 501

Query: 727 EFK 729
           E +
Sbjct: 502 EVR 504