Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 905 a.a., multidrug ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score = 92.0 bits (227), Expect = 9e-23
 Identities = 102/476 (21%), Positives = 195/476 (40%), Gaps = 72/476 (15%)

Query: 80  IVHSYGQNRFRL-YGLITPRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKK 138
           I H YGQ +  +      P     GL+GP+G GKS+++  ++G              +KK
Sbjct: 11  INHRYGQQQALVDITFNLPAGTRCGLIGPDGAGKSSLLGLIAG--------------VKK 56

Query: 139 VLDYFSGTELQNYFEKLKNNGIKPIHKPQYVDVLPKVVKGKV-GEL-------------- 183
           + D           ++   N + P      +  +P+ + G +  EL              
Sbjct: 57  LQDGQLNVLGGAIEDRRHRNSLYP-----RIAFMPQGLGGNLYPELSISENIRFFATLFG 111

Query: 184 LKKVDEKGEFEKIINALEISNILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWL 243
           L K D +     ++ + +++   DR   +LSGG  Q++ +  A + + D+   DEPT+ +
Sbjct: 112 LSKADCEQRMHNLLLSTDLARFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGV 171

Query: 244 DVKQRFSAAKVIREVAEGKKVVAVEHDLIVLDYLSDYIH---------IMYGIPSAYGVV 294
           D   R    +++  V   +  + +      ++    + H         I  G+ S     
Sbjct: 172 DPLSRRRFWELVESVRGERPQLTLLVATAYMEEAEQFEHCLMLDRGKLIADGLSSELADA 231

Query: 295 THPRGTRVGINTYLDGFLKEENIRFRKSPIVFEKRPPQDSTNRPLLLDYTDISKKLGDF- 353
           T P G      T+  G     N      P++    PP++S    + ++  D++ + GDF 
Sbjct: 232 T-PSGKLDEAFTHFQG-----NSAHGNQPLLI---PPRESDTTDIAIEAHDLTLRFGDFT 282

Query: 354 SLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT--------GDVKVSYK 405
           ++N     I +GE+ G LG NG GKTT +K L G++    G  T         D+    +
Sbjct: 283 AVNKVSFAIGRGEIFGFLGSNGCGKTTTMKVLTGLMPATEGSATLLGNPVNAKDLATRKR 342

Query: 406 PQYISSDFEGTVEDLLMSITAIHTSYYK----------SEIIKPLALENILDSSVKDLSG 455
             ++S  F    E  +     +H   +            E+I+   L ++ +    +L  
Sbjct: 343 VGFMSQSFSLYGELSVRQNLVLHAQLFDLPKAESGPRIDELIQRFDLGDVAEQPSGELPL 402

Query: 456 GELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDH 511
           G  QR+S+A  +    ++ ++DEP++ +D   R    R++  ++ E+   +F+  H
Sbjct: 403 GLRQRLSLAVAVLHRPEVLILDEPTSGVDPAARDDFWRLLIELSREQGVTIFLSTH 458



 Score = 42.4 bits (98), Expect = 8e-08
 Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 49/225 (21%)

Query: 365 GEVVGILGPNGIGKTTFVKALAGVISPDSGE--VTGDV------------KVSYKPQYIS 410
           G   G++GP+G GK++ +  +AGV     G+  V G              ++++ PQ + 
Sbjct: 31  GTRCGLIGPDGAGKSSLLGLIAGVKKLQDGQLNVLGGAIEDRRHRNSLYPRIAFMPQGLG 90

Query: 411 SDF--EGTVED------LLMSITAIHTSYYKSEIIKPLALENILDSSVKDLSGGELQRVS 462
            +   E ++ +       L  ++          ++    L    D     LSGG  Q++ 
Sbjct: 91  GNLYPELSISENIRFFATLFGLSKADCEQRMHNLLLSTDLARFADRPAGKLSGGMKQKLG 150

Query: 463 IAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEK-------------EAAMF-- 507
           +   L  D DL ++DEP+  +D   R     ++  +  E+             EA  F  
Sbjct: 151 LCCALIHDPDLLILDEPTTGVDPLSRRRFWELVESVRGERPQLTLLVATAYMEEAEQFEH 210

Query: 508 --VVDHDILFQDYISDRFI----------VFSGIAGSSGTGSEPL 540
             ++D   L  D +S               F+   G+S  G++PL
Sbjct: 211 CLMLDRGKLIADGLSSELADATPSGKLDEAFTHFQGNSAHGNQPL 255