Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 553 a.a., Energy-dependent translational throttle protein EttA from Variovorax sp. SCN45

 Score = 94.7 bits (234), Expect = 9e-24
 Identities = 108/385 (28%), Positives = 164/385 (42%), Gaps = 51/385 (13%)

Query: 188 DEKGEFEKIINALEISNILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQ 247
           D + + E   +AL +    D     LSGGE +RVA+    L + D+   DEPT+ LD + 
Sbjct: 138 DSEHQLEIAADALRLPP-WDAKIGLLSGGEKRRVALCRLLLSKPDMLLLDEPTNHLDAES 196

Query: 248 RFSAAKVIREVAEGKKVVAVEHDLIVLDYLSDYIHIM---YGIP--SAYGVVTHPRGTRV 302
                +V  +   G  VVA+ HD   LD  +++I  M    GIP    Y      +G R+
Sbjct: 197 -VEWLEVFLQRFTGT-VVAITHDRYFLDNAAEWILEMDRGRGIPWKGNYSTWLEQKGERL 254

Query: 303 GINTYLDGF----LKEENIRFRKSP-------------------IVFEKRPPQDSTNRPL 339
                 +      LK+E    R++P                   + ++KR        P+
Sbjct: 255 AQEQKSEEAHAKALKKELEWSRQNPKARQAKSKSRLARFEELSDMEYQKRNETQEIFIPV 314

Query: 340 -------LLDYTDISKKLGDFSLNVN-GGQIYQGEVVGILGPNGIGKTTFVKALAGVISP 391
                  + ++  +SK  GD  L  N    +  G +VGI+GPNG GK+T  K LAG   P
Sbjct: 315 AERLGQQVFEFHGVSKSFGDRMLIDNLSFTVPPGAIVGIIGPNGAGKSTLFKLLAGKEKP 374

Query: 392 DSGEVT--GDVKVSYKPQYIS--SDFEGTVEDLLMSITAIHTSYYKSEIIKPLALENI-- 445
           DSGEV     VK+++  Q+    ++ +   ED+   +  I+   ++          N   
Sbjct: 375 DSGEVVIGQTVKMAFVDQHRDELANQKTVWEDISNGLDIINVGKFQMASRAYAGRFNFNG 434

Query: 446 --LDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKE 503
                 V  LSGGE  R+ +A  L    ++ L+DEPS  LDVE    T R +     E  
Sbjct: 435 ADQQKKVGTLSGGERGRLHLAKTLIAGGNVLLLDEPSNDLDVE----TLRALEDALLEFA 490

Query: 504 AAMFVVDHDILFQDYISDRFIVFSG 528
             + V+ HD  F D I+   +   G
Sbjct: 491 GTVMVISHDRWFLDRIATHILAAEG 515



 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 60/205 (29%)

Query: 97  PRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLK 156
           P   + G++GPNG GKST+ K L+G+         E PD        SG       E + 
Sbjct: 346 PPGAIVGIIGPNGAGKSTLFKLLAGK---------EKPD--------SG-------EVVI 381

Query: 157 NNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNI----------- 205
              +K     Q+ D L               ++K  +E I N L+I N+           
Sbjct: 382 GQTVKMAFVDQHRDEL--------------ANQKTVWEDISNGLDIINVGKFQMASRAYA 427

Query: 206 ---------LDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIR 256
                      +    LSGGE  R+ +A   +  G++   DEP++ LDV+   +    + 
Sbjct: 428 GRFNFNGADQQKKVGTLSGGERGRLHLAKTLIAGGNVLLLDEPSNDLDVETLRALEDALL 487

Query: 257 EVAEGKKVVAVEHDLIVLDYLSDYI 281
           E A    V+ + HD   LD ++ +I
Sbjct: 488 EFA--GTVMVISHDRWFLDRIATHI 510



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 51/210 (24%)

Query: 350 LGDFSLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEV--TGDVKVSYKPQ 407
           L D SL+      + G  +G+LG NG GK+T +K +AGV     GE      + + Y  Q
Sbjct: 22  LKDISLS-----FFPGAKIGVLGLNGSGKSTLLKIMAGVDKEFEGEALPMPGMTIGYLEQ 76

Query: 408 YISSDFEGTV-EDLLMSITAIHTSYYKSEII----------------KPLALENIL---- 446
               + E TV E +  S+ A+  +  + E +                +   LE I+    
Sbjct: 77  EPKLNTEHTVRESVEESMGAVFAAKARLEEVYIAYGAEDADFDALAAEQAQLEAIIATAG 136

Query: 447 -------------------DSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQ 487
                              D+ +  LSGGE +RV++   L    D+ L+DEP+  LD E 
Sbjct: 137 TDSEHQLEIAADALRLPPWDAKIGLLSGGEKRRVALCRLLLSKPDMLLLDEPTNHLDAES 196

Query: 488 RLTTSRVIRRMADEKEAAMFVVDHDILFQD 517
                  ++R        +  + HD  F D
Sbjct: 197 VEWLEVFLQRFT----GTVVAITHDRYFLD 222