Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 634 a.a., Bis-ABC ATPase Uup from Variovorax sp. SCN45

 Score =  106 bits (265), Expect = 3e-27
 Identities = 119/496 (23%), Positives = 208/496 (41%), Gaps = 96/496 (19%)

Query: 103 GLLGPNGVGKSTIIKALSG-----------EMVLNLNDLTETPDMKKVLDYFSGTELQNY 151
           GL+G NG GKS+++K L G           +  L +  + + P +    D F+       
Sbjct: 33  GLIGRNGAGKSSLLKILGGLEKTDDGTLQLQQNLRVAYVAQEPVLDMDADVFTAA----- 87

Query: 152 FEKLKNNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGE----------FEKIINALE 201
                + G+ P+     + +    + G  G  L  +  + E           E+ ++ L 
Sbjct: 88  -----SQGLGPV-----IAIRDLYLSGADGLDLDALQSQIEAFDAWNWEQRVEETLHRLH 137

Query: 202 ISNILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEG 261
           +    D     LSGG  +RVA+A A +   D+   DEPT+ LD+       +++ +    
Sbjct: 138 LDR--DARVGSLSGGTRKRVALAQALVAAPDVLLLDEPTNHLDLDSIEWLEQLLIDFKGS 195

Query: 262 KKVVAVEHDLIVLDYLSDYI-----HIMYGIPSAYGVVTHPRGTRVG----INTYLDGFL 312
             VV V HD   L+ ++  I       +   P  +      +  ++     I+   D  L
Sbjct: 196 --VVTVTHDRSFLNRVATRIVELDRGKLGSYPGNFEQYLVQKEEQLAQEAVISAKADKLL 253

Query: 313 KEENIRFRKSPIVFE-------------------KRPPQDSTNRP---------LLLDYT 344
            +E I  RK                         +R  Q S N           ++ + T
Sbjct: 254 AQEEIWIRKGVEARRTRSQSRITRLQELRASRSARREVQGSVNMDVASGQSSGKIVAELT 313

Query: 345 DISKKLGDFSLNVN-GGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT--GDVK 401
           + +K  G  ++  N  G I +G+ VG+LGPNG GKTT +K + G + PDSG++    +++
Sbjct: 314 EATKSFGPKTVIRNFSGTILRGDKVGLLGPNGAGKTTLLKLILGELEPDSGKIRRGTNLQ 373

Query: 402 VSYKPQYISS-DFEGTVEDLL--------MSITAIHTSYYKSEIIKPLALENILDSSVKD 452
           V+Y  Q     D + T+ED +        +     H   Y S+ +   A  N   S V+ 
Sbjct: 374 VAYFDQMRDKLDLDATLEDFISPGSEWIEIGSQKKHVKSYLSDFLFSPARAN---SPVRS 430

Query: 453 LSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDHD 512
           LSGGE  R+ +A   ++ A++ ++DEP+  LD++    T  ++  +  + +  +F+V HD
Sbjct: 431 LSGGERNRLLLARLFARPANVLVLDEPTNDLDID----TLELLENLLQDYDGTVFLVSHD 486

Query: 513 ILFQDYISDRFIVFSG 528
             F D +    I + G
Sbjct: 487 RTFLDNVVTSTIAYEG 502



 Score = 52.8 bits (125), Expect = 4e-11
 Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 41/203 (20%)

Query: 352 DFSLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSG--EVTGDVKVSYKPQYI 409
           DFSL        + E VG++G NG GK++ +K L G+   D G  ++  +++V+Y  Q  
Sbjct: 23  DFSLQ-------ESERVGLIGRNGAGKSSLLKILGGLEKTDDGTLQLQQNLRVAYVAQEP 75

Query: 410 SSDFEG--------------TVEDLLMS-------------ITAIHTSYYKSEIIKPL-A 441
             D +                + DL +S             I A     ++  + + L  
Sbjct: 76  VLDMDADVFTAASQGLGPVIAIRDLYLSGADGLDLDALQSQIEAFDAWNWEQRVEETLHR 135

Query: 442 LENILDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADE 501
           L    D+ V  LSGG  +RV++A  L    D+ L+DEP+  LD    L +   + ++  +
Sbjct: 136 LHLDRDARVGSLSGGTRKRVALAQALVAAPDVLLLDEPTNHLD----LDSIEWLEQLLID 191

Query: 502 KEAAMFVVDHDILFQDYISDRFI 524
            + ++  V HD  F + ++ R +
Sbjct: 192 FKGSVVTVTHDRSFLNRVATRIV 214



 Score = 48.5 bits (114), Expect = 8e-10
 Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 22/179 (12%)

Query: 98  RDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQ-NYFEKLK 156
           R    GLLGPNG GK+T++K + GE+          PD  K+     GT LQ  YF++++
Sbjct: 334 RGDKVGLLGPNGAGKTTLLKLILGEL---------EPDSGKIR---RGTNLQVAYFDQMR 381

Query: 157 NNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNILDRTFDQLSGG 216
           +          ++   P     ++G   K V  K      + +   +N   R+   LSGG
Sbjct: 382 DKLDLDATLEDFIS--PGSEWIEIGSQKKHV--KSYLSDFLFSPARANSPVRS---LSGG 434

Query: 217 ELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVAVEHDLIVLD 275
           E  R+ +A    R  ++   DEPT+ LD+        ++++      V  V HD   LD
Sbjct: 435 ERNRLLLARLFARPANVLVLDEPTNDLDIDTLELLENLLQDY--DGTVFLVSHDRTFLD 491