Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 929 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

 Score =  100 bits (250), Expect = 2e-25
 Identities = 107/474 (22%), Positives = 203/474 (42%), Gaps = 48/474 (10%)

Query: 71  LPEE-LTDDRIVHSYGQN-RFRLYGLITPRDGVTGLLGPNGVGKSTIIKALSGEMVLNLN 128
           LPEE +  + + H YG         L  P+   T L+GP+GVGKST++  +SG   L   
Sbjct: 8   LPEEAIRIESLSHRYGGIIALNEVSLSLPKGKTTALVGPDGVGKSTLLGLISGVKKLQTG 67

Query: 129 DLT----ETPDMKKVLDYFSGTELQNYFEKLKNNGIKPIHKPQYVDVLPKVVKGKVGELL 184
            L+    +  + +K  ++ S        + L  N    +   + +D   ++        L
Sbjct: 68  RLSVLGFDLTERRKREEFLSRVAYMP--QGLGRNLYPTLSVRENIDFFGRLFG------L 119

Query: 185 KKVDEKGEFEKIINALEISNILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLD 244
             V+ +    ++++A  ++   DR   +LSGG  Q++ +  + + + D+   DEPT+ +D
Sbjct: 120 SAVEREAHMRRLLDATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEPTTGVD 179

Query: 245 VKQRFSAAKVIREVAEGKKVVAVEHDLIVLDYLSDYIHIMYGIPSAYGVVTHPRGTRVGI 304
              R    +++  +   +  + V   L+   Y+ +     + +    G V     TR  +
Sbjct: 180 PLSRRQFWELVDAMCAERPDMTV---LVSTAYMEEAERFGHLVAMDDGKVIAQGDTREIM 236

Query: 305 NTYLDGFLKEENIRFRKSPIVFEKRPPQDSTNRPL--------LLDYTDISKKLGDF-SL 355
                  L+   +R     +  +KRP  D+   P          ++  D++++ GDF ++
Sbjct: 237 RDAGADTLEAAYVRL----LPQDKRPSGDALVVPAWQDKGEAPAIEAHDLTRRFGDFVAV 292

Query: 356 NVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT--------GDVKVSYKPQ 407
           +    +I +GE+ G LG NG GKTT +K L G++    G  +        GD++   +  
Sbjct: 293 DHVSFRIGRGEIFGFLGSNGCGKTTTMKMLTGLLDATDGTASLFGRPIAPGDMETRMRVG 352

Query: 408 YISSDFEGTVEDLLMSITAIHTSYYK----------SEIIKPLALENILDSSVKDLSGGE 457
           Y+S  F    E  +     +H   Y+          S  +    LE   D+    L  G 
Sbjct: 353 YMSQAFSLYEELSVRQNLVLHARLYRVPRQQAGELVSAALAQFELEAHADAVPAALPLGI 412

Query: 458 LQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDH 511
            QR+ +AA      ++ ++DEP++ +D   R    R + R++ ++   +FV  H
Sbjct: 413 RQRLQLAAACLHRPEILILDEPTSGVDPAARDMFWRHLIRLSRDEGVTIFVSTH 466