Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 916 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

 Score = 92.4 bits (228), Expect = 7e-23
 Identities = 112/540 (20%), Positives = 233/540 (43%), Gaps = 65/540 (12%)

Query: 84  YGQNR-FRLYGLITPRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDY 142
           YG+ +  R   L  P   + GL+GP+GVGKS+++  ++G  V+   D+           Y
Sbjct: 25  YGKTQALRGIDLDIPGGRMIGLIGPDGVGKSSLLSLVAGAHVIQDGDV-----------Y 73

Query: 143 FSGTELQNYFEKLKNNGIKP--IHKPQYV--DVLPKVVKGKVGELLKKV------DEKGE 192
             G +++   +K   + + P   + PQ +  ++ P +   +  +   ++      + +  
Sbjct: 74  VLGGDMR---DKRHRSDVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGHDGAERRRR 130

Query: 193 FEKIINALEISNILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAA 252
            + +  A  +   L R   +LSGG  Q++ +  A + + D+   DEPT+ +D   R    
Sbjct: 131 IDALTRATGLDPFLARPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFW 190

Query: 253 KVIREVAEGKKVVAVEHDLIVLDYLSDYIHIMYGIPSAYGVVTHPRGT------RVGINT 306
            +I ++ + +  ++V   ++   Y+ +     + +    G +    GT      R G ++
Sbjct: 191 DLINDIRQTQAQMSV---IVATAYMDEAQRFDWLVAMDDGQIL-DTGTPAEIFARTGTSS 246

Query: 307 YLDGF---LKEENIRFRKSPIVFEKRPPQDSTNRPLLLDYTDISKKLGDF-SLNVNGGQI 362
             + F   L EE  R  +  I+    PP +++   + ++   ++ + GDF +++    +I
Sbjct: 247 LEEAFIAVLPEEKKRGHEPVII----PPLEASEDDIAIEAQGLTMRFGDFTAVDHVSFRI 302

Query: 363 YQGEVVGILGPNGIGKTTFVKALAGVISPDSGEV--------TGDVKVSYKPQYISSDFE 414
            +GE+ G LG NG GK+T +K L G++    G+           D+    +  Y+S  F 
Sbjct: 303 RRGEIFGFLGSNGCGKSTTMKMLTGLLPATEGKAWLFGNAVDPDDMSTRKRVGYMSQAFS 362

Query: 415 GTVEDLLMSITAIHTSYYK----------SEIIKPLALENILDSSVKDLSGGELQRVSIA 464
              E  +      H   +           +E+     L  +++     L  G  QR+S+A
Sbjct: 363 LYTELTVRQNLEFHAHLFHVPREDIPARVAEMADRFDLGPVMEELPDSLPLGIRQRLSLA 422

Query: 465 ACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDHDILFQDYISDRF- 523
             +    +L ++DEP++ +D   R    R++  ++   +  +F+  H  + +    DR  
Sbjct: 423 VAMVHKPELLILDEPTSGVDPVARDGFWRLLAELSRRDKVTIFISTH-FMNEAMRCDRMS 481

Query: 524 IVFSGIAGSSGTGSEPLQKRAGANKFLKEMGITFRRDPDTGRPRVNKEGSQRDVYQKEIG 583
           ++ +G    S   +  ++KR   +     +G       DT  P  ++E + +D+ Q E G
Sbjct: 482 MMHAGHVLDSDAPARLIEKRGAPDLEQAFIGYLVDAGGDTRPP--DEESALKDMAQAEHG 539