Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 555 a.a., energy-dependent translational throttle protein EttA from Paraburkholderia sabiae LMG 24235

 Score =  102 bits (253), Expect = 5e-26
 Identities = 127/489 (25%), Positives = 200/489 (40%), Gaps = 71/489 (14%)

Query: 103 GLLGPNGVGKSTIIKALSGEMV-----------LNLNDLTETP--DMKKVLDYFSGTELQ 149
           GLLG NG GKST+IK ++G              LN+  L + P  D +K +       L 
Sbjct: 36  GLLGLNGSGKSTLIKIMAGVDKDIEGEATPMPNLNIGYLPQEPQLDPQKTVREAVEDGLG 95

Query: 150 NYFEKLKN-NGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKG----EFEKIINALEISN 204
           + F+  K  + I   +     D      +    E +    + G    + E   +AL +  
Sbjct: 96  DVFQAQKKLDEIYAAYAEPDADFDALAAEQAKYEAILATSDGGSPEQQLEVAADALRLPP 155

Query: 205 ILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKV 264
             D   + LSGGE +RVA+    L + D+   DEPT+ LD +      + +        V
Sbjct: 156 -WDAKIEHLSGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAESVEWLEQFLTRFPG--TV 212

Query: 265 VAVEHDLIVLDYLSDYIHIM---YGIP--------------------------------S 289
           VAV HD   LD  +++I  +   +GIP                                 
Sbjct: 213 VAVTHDRYFLDNAAEWILELDRGHGIPWKGNYSSWLDQKEDRLKQEEASESARQKAIKKE 272

Query: 290 AYGVVTHPRGTRVGINTYLDGFLKEENIRFRKSPIVFEKRPPQDSTNRPLLLDYTDISKK 349
              V  +P+G +      +  F +  +  ++K     E   P        ++++ ++SK 
Sbjct: 273 LEWVRQNPKGRQAKSKARIARFEELNSQEYQKRNETQEIFIPVGDRLGNEVVEFKNVSKS 332

Query: 350 LGDFSLNVN-GGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT--GDVKVSYKP 406
            GD  L  N   ++  G +VGI+GPNG GK+T  + L G   PDSGE+     VK++Y  
Sbjct: 333 YGDRLLIDNLSFKLPAGAIVGIIGPNGAGKSTLFRMLTGKEQPDSGEIVQGPTVKLAYVD 392

Query: 407 QYISSDFEGT---VEDLLMSITAIHTSYYKSEIIKPLALENILDSS----VKDLSGGELQ 459
           Q   +  +GT    E +      +    Y++     +   N         V +LSGGE  
Sbjct: 393 QSRDA-LDGTKTVFEAISGGADVLTVGKYETPSRAYIGRFNFKGGDQQKIVGNLSGGERG 451

Query: 460 RVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDHDILFQDYI 519
           R+ +A  L    ++ L+DEPS  LDVE    T R +     E   ++ V+ HD  F D I
Sbjct: 452 RLHLAKTLIAGGNMLLLDEPSNDLDVE----TLRALEDALLEFAGSVMVISHDRWFLDRI 507

Query: 520 SDRFIVFSG 528
           +   + F G
Sbjct: 508 ATHILAFEG 516



 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 52/211 (24%)

Query: 350 LGDFSLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVT--GDVKVSYKPQ 407
           L D SL+      + G  +G+LG NG GK+T +K +AGV     GE T   ++ + Y PQ
Sbjct: 22  LKDISLS-----FFPGAKIGLLGLNGSGKSTLIKIMAGVDKDIEGEATPMPNLNIGYLPQ 76

Query: 408 YISSDFEGTVEDLL-----------MSITAIHTSYYKSEI-IKPLALENI---------- 445
               D + TV + +             +  I+ +Y + +     LA E            
Sbjct: 77  EPQLDPQKTVREAVEDGLGDVFQAQKKLDEIYAAYAEPDADFDALAAEQAKYEAILATSD 136

Query: 446 -------------------LDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVE 486
                               D+ ++ LSGGE +RV++   L +  D+ L+DEP+  LD E
Sbjct: 137 GGSPEQQLEVAADALRLPPWDAKIEHLSGGEKRRVALCKLLLEKPDMLLLDEPTNHLDAE 196

Query: 487 QRLTTSRVIRRMADEKEAAMFVVDHDILFQD 517
                 + + R        +  V HD  F D
Sbjct: 197 SVEWLEQFLTRF----PGTVVAVTHDRYFLD 223



 Score = 52.4 bits (124), Expect = 5e-11
 Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 30/190 (15%)

Query: 97  PRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMK-----KVLDYFSGTELQNY 151
           P   + G++GPNG GKST+ + L+G+   +  ++ + P +K     +  D   GT  +  
Sbjct: 347 PAGAIVGIIGPNGAGKSTLFRMLTGKEQPDSGEIVQGPTVKLAYVDQSRDALDGT--KTV 404

Query: 152 FEKLKNNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNILDRTFD 211
           FE + + G   +   +Y        +  +G    K    G+ +KI+              
Sbjct: 405 FEAI-SGGADVLTVGKY----ETPSRAYIGRFNFK---GGDQQKIVG------------- 443

Query: 212 QLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVAVEHDL 271
            LSGGE  R+ +A   +  G++   DEP++ LDV+   +    + E A    V+ + HD 
Sbjct: 444 NLSGGERGRLHLAKTLIAGGNMLLLDEPSNDLDVETLRALEDALLEFA--GSVMVISHDR 501

Query: 272 IVLDYLSDYI 281
             LD ++ +I
Sbjct: 502 WFLDRIATHI 511