Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 565 a.a., energy-dependent translational throttle protein EttA from Bacteroides stercoris CC31F

 Score =  101 bits (252), Expect = 7e-26
 Identities = 126/504 (25%), Positives = 209/504 (41%), Gaps = 96/504 (19%)

Query: 103 GLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLKN---NG 159
           G++G NG GKST++K ++G       ++  +P     + Y +     +  + +K     G
Sbjct: 42  GIIGLNGSGKSTLLKIIAGLDKSYQGEVVFSPGYS--VGYLAQEPYLDPAKTVKEVVMEG 99

Query: 160 IKPIHKP--QYVDVLPKVVKGKVGELLKKVDE----KGEFEKIINALEISNI-------- 205
           ++PI     +Y ++  K    +  E   K+D+    + E + II+A +  N+        
Sbjct: 100 VQPIVDALAEYEEINQKFGLPEYYEDQDKMDKLFTRQAELQDIIDATDAWNLDSKLERAM 159

Query: 206 -------LDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREV 258
                   D++ + LSGGE +RVA+    L++ DI   DEPT+ LD +      + +++ 
Sbjct: 160 DALRCPPEDQSVEHLSGGERRRVALCRLLLQKPDILLLDEPTNHLDAESIDWLEQHLQQY 219

Query: 259 AEGKKVVAVEHDLIVLDYLSDYIHIM---YGIP--------------------------- 288
            EG  V+AV HD   LD+++ +I  +    GIP                           
Sbjct: 220 -EGT-VIAVTHDRYFLDHVAGWILELDRGEGIPWKGNYSSWLEQKTKRMEQEEKTASKRR 277

Query: 289 -----SAYGVVTHPRGTRVGINTYLDGFLKEENIRFRKSPIVFEKRPPQDSTNRPLLLDY 343
                    V   P+  +      L+ + K  N   ++     E   P        +++ 
Sbjct: 278 KTLERELEWVRMAPKARQAKGKARLNSYDKLLNEDVKEKEEKLEIFIPNGPRLGNKVIEA 337

Query: 344 TDISKKLGD--------FSLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSG- 394
             ++K  GD        F L  NG       +VGI+GPNG GKTT  + + G+ +PDSG 
Sbjct: 338 KHVAKAFGDKLLFDDLNFMLPPNG-------IVGIIGPNGAGKTTLFRLIMGLDTPDSGE 390

Query: 395 -EVTGDVKVSYKPQY---------ISSDFEGTVEDLLMSITAIHTSYYKSEIIKPLALEN 444
            EV   VKV+Y  Q          +     G  + + M    I+   Y S      A + 
Sbjct: 391 FEVGETVKVAYVDQQHKDIDPNKSVYQVISGGNDLIRMGGRDINARAYLSRFNFSGADQE 450

Query: 445 ILDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEA 504
            L      LSGGE  R+ +A CL ++ ++ L+DEP+  +DV     T R +    ++   
Sbjct: 451 KLCGV---LSGGERNRLHLALCLKEEGNVLLLDEPTNDIDV----NTLRALEEGLEDFAG 503

Query: 505 AMFVVDHDILFQDYISDRFIVFSG 528
              V+ HD  F D I    + F G
Sbjct: 504 CAVVISHDRWFLDRICTHILAFEG 527



 Score = 57.4 bits (137), Expect = 2e-12
 Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 52/206 (25%)

Query: 363 YQGEVVGILGPNGIGKTTFVKALAGVISPDSGEV--TGDVKVSYKPQYISSDFEGTVEDL 420
           + G  +GI+G NG GK+T +K +AG+     GEV  +    V Y  Q    D   TV+++
Sbjct: 36  FYGAKIGIIGLNGSGKSTLLKIIAGLDKSYQGEVVFSPGYSVGYLAQEPYLDPAKTVKEV 95

Query: 421 LMS-----ITAIH-----------TSYYKSE------IIKPLALENILDS---------- 448
           +M      + A+              YY+ +        +   L++I+D+          
Sbjct: 96  VMEGVQPIVDALAEYEEINQKFGLPEYYEDQDKMDKLFTRQAELQDIIDATDAWNLDSKL 155

Query: 449 --------------SVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRV 494
                         SV+ LSGGE +RV++   L Q  D+ L+DEP+  LD E    +   
Sbjct: 156 ERAMDALRCPPEDQSVEHLSGGERRRVALCRLLLQKPDILLLDEPTNHLDAE----SIDW 211

Query: 495 IRRMADEKEAAMFVVDHDILFQDYIS 520
           + +   + E  +  V HD  F D+++
Sbjct: 212 LEQHLQQYEGTVIAVTHDRYFLDHVA 237



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 32/191 (16%)

Query: 97  PRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLK 156
           P +G+ G++GPNG GK+T+ + + G          +TPD     ++  G  ++  +   +
Sbjct: 358 PPNGIVGIIGPNGAGKTTLFRLIMG---------LDTPDSG---EFEVGETVKVAYVDQQ 405

Query: 157 NNGIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNI-LDRTFDQLSG 215
           +  I P +K  Y     +V+ G   +L++           ++    S    ++    LSG
Sbjct: 406 HKDIDP-NKSVY-----QVISGG-NDLIRMGGRDINARAYLSRFNFSGADQEKLCGVLSG 458

Query: 216 GELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKK-----VVAVEHD 270
           GE  R+ +A     EG++   DEPT+ +DV         +R + EG +      V + HD
Sbjct: 459 GERNRLHLALCLKEEGNVLLLDEPTNDIDV-------NTLRALEEGLEDFAGCAVVISHD 511

Query: 271 LIVLDYLSDYI 281
              LD +  +I
Sbjct: 512 RWFLDRICTHI 522