Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 511 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score = 85.5 bits (210), Expect = 5e-21
 Identities = 114/476 (23%), Positives = 210/476 (44%), Gaps = 84/476 (17%)

Query: 100 GVTGLLGPNGVGKSTIIKALSGEMV-LNLNDLTETPDMKKVLDYFSGTELQNYFEKLKNN 158
           G+ GLL  NG+ + +  K    E++ L +N+L +            G ++   F++   +
Sbjct: 33  GIMGLLASNGIIEGSA-KYRGHELIGLPVNELND----------IRGAKITMIFQEPMTS 81

Query: 159 GIKPIHKPQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISNILDRTFDQLSGGEL 218
            + P+++     +   ++  + G   +      E  K++   E    +D    +LSGG+ 
Sbjct: 82  -LDPLYRIG-AQIAEPIIYHRGGSKRQARARVLELLKLVGIPEPERRIDSYPHELSGGQR 139

Query: 219 QRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAE--GKKVVAVEHDLIVLDY 276
           QRV IA A   E DI   DEPT+ LDV  +     +++ + +  G  VV + HDL V+ +
Sbjct: 140 QRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQQRFGMAVVLITHDLGVVRH 199

Query: 277 LSDYIHIMYGIPSAYGVVTHPRGTRVGINTYLDGFLKEENIRFRKSPIVFEKRP----PQ 332
            ++ + +M             RG  V   T  D F   E  +   + ++ +  P    P 
Sbjct: 200 FANRVAVMR------------RGEIVETGTTEDIF---ERPQADYTKMLLDAEPSGHKPA 244

Query: 333 DSTNRPLLLDYTDIS---KKLGDF-----------SLNVNGGQIYQGEVVGILGPNGIGK 378
             +  P++L   +++   K  G F           S+NV+   ++QG+ +GI+G +G GK
Sbjct: 245 VGSEAPVVLSGKNVTIDYKIPGGFLSKSSKFRAVDSVNVD---LHQGQTIGIVGESGSGK 301

Query: 379 TTFVKALAGVISPDSG------EVTGDVKVSYKP-----QYISSDFEG------TVEDLL 421
           +T  +AL  +I  +        E+TG  + + +P     Q +  D  G      TV +++
Sbjct: 302 STLGRALLRLIVSEGRIFFGKTEITGLDRKAMRPLRRHLQLVFQDPYGSLSPRQTVGEII 361

Query: 422 MSITAIHTSYYKSEIIKPLALENI----LDSSVK-----DLSGGELQRVSIAACLSQDAD 472
                +H            A+E +    LD + +     + SGG+ QR++IA  +    +
Sbjct: 362 TEGLFVHEQQLSRAERDKRAIEALKEVGLDPAARNRYPHEFSGGQRQRIAIARAIILKPE 421

Query: 473 LYLIDEPSAFLDVEQRLTTSRVIRRMADEKEA---AMFVVDHDILFQDYISDRFIV 525
           + ++DEP++ LD   R    +VI  + D ++A   +   + HD+     ISD  IV
Sbjct: 422 VVILDEPTSALD---RSVQGQVIDLLRDLQKAHGLSYIFISHDLSVIKAISDYVIV 474



 Score = 55.1 bits (131), Expect = 7e-12
 Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 26/196 (13%)

Query: 103 GLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLKN---NG 159
           G++G +G GKST+ +AL   +V             +   +F  TE+     K        
Sbjct: 292 GIVGESGSGKSTLGRALLRLIV------------SEGRIFFGKTEITGLDRKAMRPLRRH 339

Query: 160 IKPIHKPQYVDVLPKVVKGKV---------GELLKKVDEKGEFEKIINALEISNILDRTF 210
           ++ + +  Y  + P+   G++          +L +   +K   E +          +R  
Sbjct: 340 LQLVFQDPYGSLSPRQTVGEIITEGLFVHEQQLSRAERDKRAIEALKEVGLDPAARNRYP 399

Query: 211 DQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREV--AEGKKVVAVE 268
            + SGG+ QR+AIA A + + ++   DEPTS LD   +     ++R++  A G   + + 
Sbjct: 400 HEFSGGQRQRIAIARAIILKPEVVILDEPTSALDRSVQGQVIDLLRDLQKAHGLSYIFIS 459

Query: 269 HDLIVLDYLSDYIHIM 284
           HDL V+  +SDY+ +M
Sbjct: 460 HDLSVIKAISDYVIVM 475



 Score = 50.1 bits (118), Expect = 2e-10
 Identities = 53/245 (21%), Positives = 105/245 (42%), Gaps = 42/245 (17%)

Query: 362 IYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVTGDVKVSYK-----PQYISSDFEGT 416
           + QGE + ++G +G GK+  +  + G+++  +G + G  K         P    +D  G 
Sbjct: 11  VKQGETLAVVGESGSGKSQTMMGIMGLLA-SNGIIEGSAKYRGHELIGLPVNELNDIRGA 69

Query: 417 VEDLLMS--ITAIHTSYY--------------------KSEIIKPLALENI------LDS 448
              ++    +T++   Y                     ++ +++ L L  I      +DS
Sbjct: 70  KITMIFQEPMTSLDPLYRIGAQIAEPIIYHRGGSKRQARARVLELLKLVGIPEPERRIDS 129

Query: 449 SVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFV 508
              +LSGG+ QRV IA  L+ + D+ + DEP+  LDV  +     +++ +      A+ +
Sbjct: 130 YPHELSGGQRQRVMIAMALANEPDILIADEPTTALDVTIQAQILDLLKSLQQRFGMAVVL 189

Query: 509 VDHDILFQDYISDRFIVF-SGIAGSSGTGSEPLQK-RAGANKFLKEMGITFRRDPDTGRP 566
           + HD+    + ++R  V   G    +GT  +  ++ +A   K L +       +P   +P
Sbjct: 190 ITHDLGVVRHFANRVAVMRRGEIVETGTTEDIFERPQADYTKMLLD------AEPSGHKP 243

Query: 567 RVNKE 571
            V  E
Sbjct: 244 AVGSE 248