Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  104 bits (260), Expect = 9e-27
 Identities = 120/481 (24%), Positives = 213/481 (44%), Gaps = 79/481 (16%)

Query: 104 LLGPNGVGKSTIIKAL-----------SGEMVLNLND-----LTETPDMKKVLDYFSGTE 147
           ++G +G GKS   +++           SG ++LN  D     L +     + +    G +
Sbjct: 42  VVGESGSGKSVTARSILQIIDSPGYITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGAD 101

Query: 148 LQNYFEKLKNNGIKPIHK--PQYVDVLPKVVKGKVGELLKKVDEKGEFEKIINALEISN- 204
           +   F++  ++ + P+H    Q  +VL   +K      + K   + E  +++  +EI N 
Sbjct: 102 IAMIFQEPMSS-LSPVHTVGDQITEVLRLHLK------MSKAQARAEAIELLRQVEIPNP 154

Query: 205 --ILDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREV--AE 260
              LDR   Q SGG  QR  IA A   +  +   DEPT+ LDV  +     +I  +  A 
Sbjct: 155 EKALDRYAFQYSGGMRQRAMIAMALACKPQLLIADEPTTALDVTTQAEILDLISRLQKAH 214

Query: 261 GKKVVAVEHDLIVLDYLSDYIHIMY-GIPSAYGVVTH----PRG--TRVGINTYLDGFLK 313
           G  V+ + HD+ V+  ++D + +M+ G+   YG V      P+   TR+ I + L    K
Sbjct: 215 GMAVLFITHDMGVVAQIADDVLVMHHGVVKEYGTVEQIFHKPQDPYTRMLIGSVLKLEQK 274

Query: 314 EENIRFRKSPIVFEKRPPQDSTNRPLLLDYTDISKKLGDF-SLNVNGGQIYQGEVVGILG 372
            E IR          RPP D T  P+L +  D+S   G+  +L+    ++  GE +GI+G
Sbjct: 275 AE-IRLA--------RPPLDQTAAPIL-EVKDLSMHFGEMKALDGVSIKLLPGETLGIVG 324

Query: 373 PNGIGKTTFVKALAGVISPDSGEV-----------------------TGDVKVSYKPQYI 409
            +G GKTT  +++  +  P +GE+                         ++++ ++  + 
Sbjct: 325 ESGSGKTTMGRSIMRLYDPTAGEMLYRRADGSVVDLSKIEGKELKAARRELRMVFQDPFG 384

Query: 410 SSDFEGTVEDLL---MSITAIHTSYYKSEIIKPLALENILDSSVKD-----LSGGELQRV 461
           S +   TV  ++   + +  I       E +  L  +  LD S ++      SGG+ QR+
Sbjct: 385 SLNPRMTVAQVIGEPLLVNGIAKGKELEERVCSLMEQVGLDPSGRERYPHAFSGGQRQRI 444

Query: 462 SIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDHDILFQDYISD 521
            IA  ++    + + DE ++ LDV  R     ++ ++ DE   A   + HDI    Y+ D
Sbjct: 445 GIARAITLRPRIIVADEATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCD 504

Query: 522 R 522
           R
Sbjct: 505 R 505



 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 27/200 (13%)

Query: 103 GLLGPNGVGKSTIIKAL-------SGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKL 155
           G++G +G GK+T+ +++       +GEM+    D     D+ K+     G EL     K 
Sbjct: 321 GIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRAD-GSVVDLSKI----EGKEL-----KA 370

Query: 156 KNNGIKPIHKPQYVDVLPKVVKGKV-GE--LLKKVDEKGEFEKIINALEISNILD----- 207
               ++ + +  +  + P++   +V GE  L+  + +  E E+ + +L     LD     
Sbjct: 371 ARRELRMVFQDPFGSLNPRMTVAQVIGEPLLVNGIAKGKELEERVCSLMEQVGLDPSGRE 430

Query: 208 RTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAE--GKKVV 265
           R     SGG+ QR+ IA A      I   DE TS LDV  RF    ++ ++ +  G   +
Sbjct: 431 RYPHAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQVLDLLMKLQDELGLAYI 490

Query: 266 AVEHDLIVLDYLSDYIHIMY 285
            + HD+ V+ Y+ D + +MY
Sbjct: 491 FISHDIGVIRYMCDRVGVMY 510



 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 46/240 (19%)

Query: 344 TDISKKLGDFSLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVI-SPD---SGEVT-- 397
           T + + + D S ++       G+ + ++G +G GK+   +++  +I SP    SG +   
Sbjct: 21  TGVFRAVNDISFSIE-----PGKTLCVVGESGSGKSVTARSILQIIDSPGYITSGSIILN 75

Query: 398 ------------------------GDVKVSYKPQYISSDFEGTVEDLLMSITAIHTSYYK 433
                                    D+ + ++    S     TV D +  +  +H    K
Sbjct: 76  KADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITEVLRLHLKMSK 135

Query: 434 S-------EIIKPLALEN---ILDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFL 483
           +       E+++ + + N    LD      SGG  QR  IA  L+    L + DEP+  L
Sbjct: 136 AQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQLLIADEPTTAL 195

Query: 484 DVEQRLTTSRVIRRMADEKEAAMFVVDHDILFQDYISDRFIVF-SGIAGSSGTGSEPLQK 542
           DV  +     +I R+      A+  + HD+     I+D  +V   G+    GT  +   K
Sbjct: 196 DVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKEYGTVEQIFHK 255