Pairwise Alignments

Query, 590 a.a., ribosome biogenesis/translation initiation ATPase RLI from Methanococcus maripaludis S2

Subject, 553 a.a., Energy-dependent translational throttle protein EttA from Acinetobacter radioresistens SK82

 Score = 95.1 bits (235), Expect = 7e-24
 Identities = 124/503 (24%), Positives = 206/503 (40%), Gaps = 81/503 (16%)

Query: 103 GLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLKNNGIKP 162
           G+LG NG GKST+++ ++G       +    P +K  + Y       +  + ++ N    
Sbjct: 36  GVLGLNGAGKSTLLRIMAGVDKDFSGEARAQPGIK--IGYLEQEPPLDPNKDVRGNVEDG 93

Query: 163 IHKPQYVDVLPKVVKGKVGELLKKVD------EKGEFEKIINALEISNI----------- 205
           + +P  +D L ++ +       +  D      E+ + E II   +  N+           
Sbjct: 94  LREP--LDALARLDEVFAEYAAEDADFDALAKEQEKLEAIIQTWDAHNLNNQMEQAAAAL 151

Query: 206 ----LDRTFDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEG 261
                D     LSGGE +RVA+    L + D+   DEPT+ LD +      + +++    
Sbjct: 152 NLPAWDADVTLLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVSWLERFLKDFPG- 210

Query: 262 KKVVAVEHDLIVLDYLSDYIHIM---YGIP--SAYGVVTHPRGTRVG------------- 303
             +VA+ HD   LD ++++I  +   +GIP    Y      +  R+              
Sbjct: 211 -TIVAITHDRYFLDNVAEWILELDRGHGIPYQGNYTSWLEQKNARLEQEQKQEESFAKAL 269

Query: 304 ------INTYLDGFLKEENIRFRKSPIVFEKRPPQDSTNRPLLLDYTDISKKLGD----- 352
                 + +   G  K+   R  +   +  K   Q +    +   Y     +LG+     
Sbjct: 270 KKELEWVRSNAKGQQKKNKARMERFEELNSKEFQQRNETSEI---YIPPGPRLGNKVVEV 326

Query: 353 --FSLNVNGGQIYQG--------EVVGILGPNGIGKTTFVKALAGVISPDSGEVT-GD-V 400
              S + +G  +Y+          +VGI+GPNG GKTT  + + G   PD+G VT GD V
Sbjct: 327 EGISKSFDGRLLYENLTFSVPPTAIVGIVGPNGAGKTTLFRMMTGEQQPDTGTVTLGDSV 386

Query: 401 KVSYKPQYISS-DFEGTV-EDLLMSITAIHTSYYKSEIIKPLALENI----LDSSVKDLS 454
           KV+Y  Q   + D   TV E++   +  +    Y+      +   N         V +LS
Sbjct: 387 KVAYVGQIRDTLDNNKTVWEEVSGGLDILKVGDYEIASRAYIGRFNFKGQDQQKRVGELS 446

Query: 455 GGELQRVSIAACLSQDADLYLIDEPSAFLDVEQRLTTSRVIRRMADEKEAAMFVVDHDIL 514
           GGE  R+ +A  L Q A++ L+DEPS  LD+E    T R +          + VV HD  
Sbjct: 447 GGERNRLQLAKILQQGANVILLDEPSNDLDIE----TLRALEDAILVFPGTVMVVSHDRW 502

Query: 515 FQDYISDRFIVFSGIAGSSGTGS 537
           F D I+   + F        TG+
Sbjct: 503 FLDRIATHILSFENEQPEFYTGN 525



 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 52/215 (24%)

Query: 350 LGDFSLNVNGGQIYQGEVVGILGPNGIGKTTFVKALAGVISPDSGEVTGD--VKVSY--- 404
           L D SL+      + G  +G+LG NG GK+T ++ +AGV    SGE      +K+ Y   
Sbjct: 22  LKDISLS-----FFPGAKIGVLGLNGAGKSTLLRIMAGVDKDFSGEARAQPGIKIGYLEQ 76

Query: 405 -KPQYISSDFEGTVE-------DLLMSITAIHTSYYKSE---------------IIKPLA 441
             P   + D  G VE       D L  +  +   Y   +               II+   
Sbjct: 77  EPPLDPNKDVRGNVEDGLREPLDALARLDEVFAEYAAEDADFDALAKEQEKLEAIIQTWD 136

Query: 442 LENI---------------LDSSVKDLSGGELQRVSIAACLSQDADLYLIDEPSAFLDVE 486
             N+                D+ V  LSGGE +RV++   L    D+ L+DEP+  LD E
Sbjct: 137 AHNLNNQMEQAAAALNLPAWDADVTLLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAE 196

Query: 487 QRLTTSRVIRRMADEKEAAMFVVDHDILFQDYISD 521
               +   + R   +    +  + HD  F D +++
Sbjct: 197 ----SVSWLERFLKDFPGTIVAITHDRYFLDNVAE 227



 Score = 42.7 bits (99), Expect = 4e-08
 Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 34/192 (17%)

Query: 97  PRDGVTGLLGPNGVGKSTIIKALSGEMVLNLNDLTETPDMKKVLDYFSGTELQNYFEKLK 156
           P   + G++GPNG GK+T+ + ++GE   +   +T    +K          +    + L 
Sbjct: 347 PPTAIVGIVGPNGAGKTTLFRMMTGEQQPDTGTVTLGDSVKVAY-------VGQIRDTLD 399

Query: 157 NNGIKPIHKPQYVDVLPKVVKGKVGE-------LLKKVDEKGEFEKIINALEISNILDRT 209
           NN          +D+L      KVG+        + + + KG+ ++            + 
Sbjct: 400 NNKTVWEEVSGGLDIL------KVGDYEIASRAYIGRFNFKGQDQQ------------KR 441

Query: 210 FDQLSGGELQRVAIAAACLREGDIYYFDEPTSWLDVKQRFSAAKVIREVAEGKKVVAVEH 269
             +LSGGE  R+ +A    +  ++   DEP++ LD++   +    I  +     V+ V H
Sbjct: 442 VGELSGGERNRLQLAKILQQGANVILLDEPSNDLDIETLRALEDAI--LVFPGTVMVVSH 499

Query: 270 DLIVLDYLSDYI 281
           D   LD ++ +I
Sbjct: 500 DRWFLDRIATHI 511