Pairwise Alignments

Query, 784 a.a., DNA-directed DNA polymerase from Methanococcus maripaludis S2

Subject, 786 a.a., DNA polymerase II from Pseudomonas putida KT2440

 Score =  136 bits (343), Expect = 4e-36
 Identities = 147/607 (24%), Positives = 272/607 (44%), Gaps = 66/607 (10%)

Query: 193 LEYVKDEKELIKRIIEILKEYD--IIYTYNGDNFDFPYLKKRAESFGLELKLGKNDEKIK 250
           LEY  D   LI R+ + +  +D   I  +N   FD   L + A+S  + L LG+N   + 
Sbjct: 197 LEYCADRAALITRLNQWMARHDPDAIIGWNLVQFDLRLLHEHAKSLQVPLALGRNGAVMT 256

Query: 251 ITK--GGMNSKSYIPGRVHID-LYPIARRLLNLTKYRLENVTEALF-DVKKVDVGHENIP 306
           +    GG +  +  PGR+ ID +  +     +   + LENV + L  + K +D  ++ + 
Sbjct: 257 LRSHAGGGHVFADAPGRLLIDGIEALRSATWSFASFSLENVAQTLLGEGKAIDTPYQRMD 316

Query: 307 KMWDNLDE---TLVEYSHQDAYYTQRIGEQFLPLEIMFSRVVNQSLYDINRMSSSQMVEY 363
           ++     E    L  Y+ +D     RI      L+ +  R     L       S     +
Sbjct: 317 EINRRFAEDKPALARYNLKDCELVTRIFAHTRLLDFLLERASVTGLAVDRSGGSVAAFCH 376

Query: 364 LLLKNSYKMGVIAPNRPSGKEYQKRIRSSYEGGYVKEPLKGIHEDIVSMDFLSLYPSIIM 423
           L +   +++G +AP+  S      R   +  GG+V +   G+++ ++ +D+ SLYPSII 
Sbjct: 377 LYIPQMHRLGFVAPSLGS------RPDEASPGGFVMDSRPGLYDSVLVLDYKSLYPSIIR 430

Query: 424 SHNLSPETIDCTCCSDEENGENEEILGHKFCKKSIGIIPKTLMDLINRRKKVKKVLREKA 483
           +  + P  +       ++    E   G +F                +R +     + E+ 
Sbjct: 431 TFLIDPVGLIEGLRQPDDAHSVEGFRGGRF----------------SRTQHCLPAIVERV 474

Query: 484 EKGEFDEEYQILDYEQRSIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEE 543
            +G    + +      +++K++ N+ YG L     R++    A   T  G Q +++T   
Sbjct: 475 WQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHQIMRQTRSL 534

Query: 544 AENFGFKVIYADTDG--FYSKWADDKEKLSKY--ELLEKTREFLK-NINNT--LPGEMEL 596
            E  G+ VIY DTD    + K A  +E  ++   EL+ K  ++ + +++ T  L   +EL
Sbjct: 535 IEACGYDVIYGDTDSTFVWLKGAHAEEDAARIGRELVAKVNQWWQAHLHETMNLHSALEL 594

Query: 597 EFEGYFKRGIFVT--------KKKYALI----DENEKITVKGLEVVRRDWSNVSKNTQKN 644
           +FE +++R +  T        KK+YA +    D  E++  KGLE VR DWS +++  Q+ 
Sbjct: 595 QFEVHYRRFLMPTIRGTDEGSKKRYAGLVQRADGAEEMVYKGLESVRTDWSPLARQFQQE 654

Query: 645 VLNALLKEGSVENAKKVIQDTIKELKDGKVNNEDLLIHTQLTKRIEDY-KTTAPHVEVAK 703
           +   + +    E  +  +++ ++    G+  +E L+   +L + + DY +   PHV  A+
Sbjct: 655 LYGRVFRS---EPYRDYVREYVRRTLAGE-QDELLVYRKRLRRPLADYQRNVPPHVRAAR 710

Query: 704 ------KILKSGNRVNTGDVISYIITSGNKSISERAEILENAKNYDTNYYIENQILPPVI 757
                 K L+   +   G  ISY+IT+      E  E L+   +YD  +YI  Q+LP   
Sbjct: 711 LADDYNKRLQRPLQYQRGGWISYVITTAG---PEPLENLQAPIDYD--HYISRQLLPVAD 765

Query: 758 RLMEALG 764
            ++  +G
Sbjct: 766 AILPFVG 772