Pairwise Alignments

Query, 784 a.a., DNA-directed DNA polymerase from Methanococcus maripaludis S2

Subject, 783 a.a., DNA polymerase II from Escherichia coli ECRC100

 Score =  135 bits (339), Expect = 1e-35
 Identities = 150/648 (23%), Positives = 276/648 (42%), Gaps = 96/648 (14%)

Query: 109 LYEYDIPFVRRYLIDNSVIPTSTW---DFENNKKIDNKI-------PDFKTVSFDIE--- 155
           +YE D+    RYL++   I +  W   D  N   ++ ++       P  K VS DIE   
Sbjct: 103 VYEADVRPPERYLMER-FITSPVWVEGDMHNGAIVNARLKPHPDYRPPLKWVSIDIETTR 161

Query: 156 ---VYCNKEPNPKKDPIIMASFSSKDFNTVVSTKKFDHEKLEYVKDEKELIKRIIEILKE 212
              +YC       +  + M    + D + +      D E LEYV    +L++++      
Sbjct: 162 HGELYCIGLEGCGQRIVYMLGPENGDASAL------DFE-LEYVASRPQLLEKLNAWFAN 214

Query: 213 YD--IIYTYNGDNFDFPYLKKRAESFGLELKLGKNDEKIKITKGGMNSKSYIP---GRVH 267
           YD  +I  +N   FD   L+K AE + + L+LG+++ +++  + G  +  +     GR+ 
Sbjct: 215 YDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLI 274

Query: 268 ID-LYPIARRLLNLTKYRLENVTEALFDVKKVDVGHENIPKMWDNLDE----------TL 316
           ID +  +     N + + LE V + L    K      +I   WD +DE           L
Sbjct: 275 IDGIEALKSAFWNFSSFSLETVAQELLGEGK------SIDNPWDRMDEIDRRFAEDKPAL 328

Query: 317 VEYSHQDAYYTQRIGEQFLPLEIMFSRVVNQSLYDINRMSSSQMVEYLLLKNSYKMGVIA 376
             Y+ +D     +I  +   +  +  R     L       S     +L     ++ G +A
Sbjct: 329 ATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVA 388

Query: 377 PNRPSGKEYQKRIRSSYEGGYVKEPLKGIHEDIVSMDFLSLYPSIIMSHNLSPETIDCTC 436
           PN      +         GGYV +   G+++ ++ +D+ SLYPSII +  + P  +    
Sbjct: 389 PNLGEVPPHAS------PGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGM 442

Query: 437 CSDEENGENEEILGHKFCKKSIGIIPKTLMDLINRRKKVKKVLREKAEKGEFDEEYQILD 496
              +     E  L   F ++    +P+ + ++ + R + K+   +   +           
Sbjct: 443 AQPDPEHSTEGFLDAWFSREK-HCLPEIVTNIWHGRDEAKRQGNKPLSQ----------- 490

Query: 497 YEQRSIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAENFGFKVIYADT 556
               ++K++ N+ YG L     R++        T  G Q +++T    E  G+ VIY DT
Sbjct: 491 ----ALKIIMNAFYGVLGTTACRFFDPRLVSSITMRGHQIMRQTKALIEAQGYDVIYGDT 546

Query: 557 DGFYSKWADDKEKLSKYELLEKTREFLKNIN---------NTLPGEMELEFEGYFKRGIF 607
           D  +  W   K   S+ E  +  R  ++++N           L   +ELE+E +F R + 
Sbjct: 547 DSTF-VWL--KGAHSEEEATKIGRALVQHVNVWWAETLQKQQLTSALELEYETHFCRFLM 603

Query: 608 VT--------KKKYA-LIDENEK--ITVKGLEVVRRDWSNVSKNTQKNVLNALLKEGSVE 656
            T        KK+YA LI E +K  +  KGLE VR DW+ +++  Q+ +   + +    E
Sbjct: 604 PTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRN---E 660

Query: 657 NAKKVIQDTIKELKDGKVNNEDLLIHTQLTKRIEDY-KTTAPHVEVAK 703
             ++  ++TI +L  G+++   L+   +L + + +Y +   PHV  A+
Sbjct: 661 PYQEYFRETIDKLMAGELDAR-LVYRKRLRRPLSEYQRNVPPHVRAAR 707