Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 204 a.a., putative transporter, required for glycine utilization (from data) from Pseudomonas simiae WCS417

 Score = 95.1 bits (235), Expect = 8e-25
 Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 4/200 (2%)

Query: 6   IFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYA-LRS 64
           +  ++ +I + A A+ GAL   ++G+D  G++++  +TALGGG  RD+L+   P   ++ 
Sbjct: 1   MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLLGHYPLTWVKH 60

Query: 65  PNDMGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGI 124
           P  + +  I     I I  +     S   +    DAVGL AFT  G M A          
Sbjct: 61  PEYLVLTSIAALVTIFIAPLMRRLRS---LFLALDAVGLVAFTLIGCMTALEMGHGMLVA 117

Query: 125 IILATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICS 184
            +   +TGV GGI+ DI     P     + YAS S + A  + L +   L  E + ++  
Sbjct: 118 SVSGVITGVFGGILRDIFCNDIPLIFRRELYASVSFLAAWFYMLCLYLELPSEQAILLTL 177

Query: 185 IVVLMIRIVAILCKWSLPKF 204
               ++R++AI   W +PKF
Sbjct: 178 FSGFLLRLLAIRFHWEMPKF 197



 Score = 50.4 bits (119), Expect = 2e-11
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 5   NIFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALRS 64
           ++F  ++ +GL+AF ++G +  ++ G  +L   V G++T + GGI RD+  N IP   R 
Sbjct: 86  SLFLALDAVGLVAFTLIGCMTALEMGHGMLVASVSGVITGVFGGILRDIFCNDIPLIFRR 145

Query: 65  PNDMGVALIGVW 76
                V+ +  W
Sbjct: 146 ELYASVSFLAAW 157