Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 203 a.a., conserved inner membrane protein from Pseudomonas putida KT2440

 Score = 92.0 bits (227), Expect = 7e-24
 Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 5/206 (2%)

Query: 6   IFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYA-LRS 64
           +  ++ +I + A A+ GAL   ++G+D  G++++  +TALGGG  RD+L+   P   ++ 
Sbjct: 1   MLLMLYLIAITAEAMTGALSAGRRGMDWFGVVLIACVTALGGGSVRDVLLGHYPLTWVKH 60

Query: 65  PNDMGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGI 124
           P  + +        I I  +     S   +  + DA+GL AFT  G M A          
Sbjct: 61  PEYLVLTSFAALLTIFIAPMMRRLRS---LFLVLDALGLVAFTLIGCMTALEMGQGMLVA 117

Query: 125 IILATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICS 184
            I   +TGV GGI+ DI     P     + YAS S   A  +   +   +  E + ++  
Sbjct: 118 SISGVITGVFGGILRDIFCNDIPLVFRRELYASVSFAAAWFYLGCVYFKVPAEQAMLLTL 177

Query: 185 IVVLMIRIVAILCKWSLPKF-YSEQK 209
               ++R++AI   W +PKF Y++Q+
Sbjct: 178 FGGFLVRLLAIRFHWEMPKFHYNDQQ 203



 Score = 52.0 bits (123), Expect = 8e-12
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 5   NIFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALRS 64
           ++F +++ +GL+AF ++G +  ++ G  +L   + G++T + GGI RD+  N IP   R 
Sbjct: 86  SLFLVLDALGLVAFTLIGCMTALEMGQGMLVASISGVITGVFGGILRDIFCNDIPLVFRR 145

Query: 65  PNDMGVALIGVW--CAIVIFKV 84
                V+    W     V FKV
Sbjct: 146 ELYASVSFAAAWFYLGCVYFKV 167