Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 218 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score = 94.0 bits (232), Expect = 2e-24
 Identities = 56/189 (29%), Positives = 103/189 (54%), Gaps = 9/189 (4%)

Query: 18  FAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRD-LLVNTIPYALRSPNDMGVALIGVW 76
           FA+ GAL  ++KG D +G+  L ++T +GGG+ RD L +  +P  L S       L+ V 
Sbjct: 20  FALTGALTAMRKGYDFVGVFFLALVTGIGGGLLRDGLFLQQVPAVLGSH-----YLLAVV 74

Query: 77  CAIVIFKVFNEDVSN-KYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGIIILATLTGVGG 135
            A VI  VF + ++    +  + DA+GL  +T  GA  A N  + +   +++  +  VGG
Sbjct: 75  VATVIGLVFGQSLNRLALVFLLVDALGLGLYTVFGAQKALNAGLGWIPALLIGVINAVGG 134

Query: 136 GIISDILLQKTPSALTE-DFYASCSIIGAIAF-YLAILSNLSLEMSAVICSIVVLMIRIV 193
           G++ D++ ++ P      +FYA+ S+ G + F  LA+   L+ +++A+    V +++R+ 
Sbjct: 135 GVLRDLMSREDPLIFRPGEFYAAASLAGGMVFAVLALGMGLAAQLAALAGIGVTVLVRVA 194

Query: 194 AILCKWSLP 202
           ++   W  P
Sbjct: 195 SVRFGWRTP 203



 Score = 45.4 bits (106), Expect = 8e-10
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 6   IFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALR 63
           +F +++ +GL  + V GA K +  GL  +  +++G++ A+GGG+ RDL+    P   R
Sbjct: 93  VFLLVDALGLGLYTVFGAQKALNAGLGWIPALLIGVINAVGGGVLRDLMSREDPLIFR 150



 Score = 42.7 bits (99), Expect = 5e-09
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 97  IPDAVGLSA---FTTTGAMIAYNFDVSFFGIIILATLTGVGGGIISD-ILLQKTPSALTE 152
           +P A  L+A   F  TGA+ A      F G+  LA +TG+GGG++ D + LQ+ P+ L  
Sbjct: 8   LPLAFDLAATFLFALTGALTAMRKGYDFVGVFFLALVTGIGGGLLRDGLFLQQVPAVLGS 67

Query: 153 DFYASCSIIGAIAFYLAILSNLSLEMSAVICSIV 186
            +  +      +A  + ++   SL   A++  +V
Sbjct: 68  HYLLAV----VVATVIGLVFGQSLNRLALVFLLV 97