Pairwise Alignments

Query, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

Subject, 205 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score = 84.7 bits (208), Expect = 1e-21
 Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 6/202 (2%)

Query: 6   IFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYA-LRS 64
           +  I+ ++G+ A A+ GAL   ++ +D  G+I++   TA+GGG  RD+L+   P   ++ 
Sbjct: 2   LLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKH 61

Query: 65  PNDMGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGI 124
           P      +I    A++   V       + +  + DA+GL  F+  GA +A +        
Sbjct: 62  PE---YVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIA 118

Query: 125 IILATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILSNLSLEMSAVICS 184
           ++ A  TGV GG++ D+  ++ P    ++ YA  S   A+  Y+A+   +S     +I +
Sbjct: 119 VVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAV-LYIALQHYVSNHDVVIIST 177

Query: 185 IVV-LMIRIVAILCKWSLPKFY 205
           +V     R++A+  K  LP FY
Sbjct: 178 LVFGFFARLLALRLKLGLPVFY 199