Pairwise Alignments

Query, 234 a.a., TrmJ/YjtD family RNA methyltransferase from Methanococcus maripaludis S2

Subject, 256 a.a., RNA methyltransferase from Pseudomonas simiae WCS417

 Score = 86.3 bits (212), Expect = 5e-22
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 6/154 (3%)

Query: 5   VILVNPKYGGNLGAIARNMMNFDVEELRIVGTPEILDDEAYIRAVHAKNILNNAKFYSKL 64
           V+LVN  + GN+G +AR M N  +  L +V        EA  RA  A ++L  A+  + L
Sbjct: 7   VVLVNTSHPGNIGGVARAMKNMGLTRLVLVEPRVFPHHEADARASGANDLLEKAQVVATL 66

Query: 65  EDAISDIDFTVATTGAVCGDRNVNRVPITPRELAKK---HSSISGTLGIVFGREDDGLKN 121
           EDA+   +  + T+     DR +    + PRE   K    ++    + +VFGRED GL N
Sbjct: 67  EDALVGCNLVLGTSAR---DRRIPWPLLDPRECGTKVVEEAAGGAEIALVFGREDSGLTN 123

Query: 122 EDVELCDILVSVPTSNKYPILNLSHAVSVILYEI 155
           E+++ C   V +P+  ++  LNL  AV V+ YE+
Sbjct: 124 EELQRCHYHVHIPSDPEFSSLNLGAAVQVLTYEV 157