Pairwise Alignments

Query, 626 a.a., ATP-dependent endonuclease from Methanococcus maripaludis S2

Subject, 534 a.a., hypothetical protein from Variovorax sp. SCN45

 Score = 48.9 bits (115), Expect = 6e-10
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 24/161 (14%)

Query: 228 FGKLLKEYTKGRNGEGIKEAL-KNLATESNQVFEELQKSVCNDNIQIAFPNTSFSVQYNP 286
           FGKL K    G +   ++E L KN     NQ+      SV    I+  + +    V++N 
Sbjct: 272 FGKLCK--VAGLDPRKLQELLDKNDQATRNQLANRAG-SVVTAEIRRLWKDRPLKVRFNL 328

Query: 287 DPKDQDIYKSALIYVDDG---FKSELKDKGSGIQSAMTIGLFNFYIKHIAHNSG-----S 338
           D +    Y   L+   +G    +  L+++  G Q       F+FYI   A   G     +
Sbjct: 329 DGQ----YLDTLVSDPNGAYEVEVNLEERSRGFQ-----WFFSFYIAFFADTQGGRAEDA 379

Query: 339 LLAIEEPELYLHPHGRRIISDRLSEFIGEDENQVILTTHSP 379
           +L ++EP L+LH H +   +D L+ F  +  NQ+I TTHSP
Sbjct: 380 ILLLDEPGLHLHAHSQ---ADLLAHFEKDFGNQIIYTTHSP 417



 Score = 31.6 bits (70), Expect = 9e-05
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 3  LSKVHIENYRSIKELDLTFDQGKNVIVGKNNAGKSNIIKAI 43
          L+   I N+RSI +           I+G+N++GKSN+++A+
Sbjct: 3  LASFQITNFRSINDSGSIDSTQITAILGRNDSGKSNLLRAL 43