Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 640 a.a., ATP-dependent zinc metalloprotease FtsH from Xanthobacter sp. DMC5

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 112/489 (22%), Positives = 193/489 (39%), Gaps = 86/489 (17%)

Query: 12  SLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           + +DVAG ++ K  L E +E +        +GG+  + +LL GPPG+GKT LA AIA + 
Sbjct: 155 TFDDVAGIDEAKSDLTEIVEFLRDPQKFQRLGGRIPRGVLLVGPPGTGKTLLARAIAGEA 214

Query: 64  AFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL-------- 109
                 ++ S     D +   VG  A+       ++      +I +DE+D +        
Sbjct: 215 NVPFFTISGS-----DFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGAGL 269

Query: 110 -SGNDDRGGVAEIIKV----LKTAENPVILTAN---DVYKPALM---TLRNSVNLINVGS 158
             GND+R      + V     +  E  +++ A    DV  PAL+        V + N   
Sbjct: 270 GGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALLRPGRFDRQVIVPNPDV 329

Query: 159 VHTNSIPPV-LRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGS------I 211
           V    I  V  R+I +     + + I +     SG DL    N+   +A   +       
Sbjct: 330 VGREQILKVHARKIPVAPDVNL-KTIARGTPGFSGADLANLCNEAALMAARRNKRMVTMA 388

Query: 212 EIEDAKELPDRDSE-KSIFDAMRIIMKTTHYD-----IATSA-TRDVKEDIGTIEEWISE 264
           E EDAK+     +E +S+       M T +++     +A +    D       I    + 
Sbjct: 389 EFEDAKDKVMMGAERRSLVMTEEEKMLTAYHEGGHAIVALNVPATDPVHKATIIPRGRAL 448

Query: 265 NLPKEYLKYKDLAEGYDYLSKSDVFL--GRVYRRQYFG---LWRYASALMTAGTALAKEE 319
            +  +  +   L+  Y+ ++     +  GRV     FG   +   A++ +   T LAK  
Sbjct: 449 GMVMQLPERDKLSMSYEQMTSRLAIMMGGRVAEELVFGHDKVTSGAASDIEQATRLAK-- 506

Query: 320 KYRGFTRYGPPAIFTKLSRTKGSRQKMKDILKKIALKTH---------TSTKRARNTVD- 369
                TR+G    F+ L       +  +D+   ++++ H         T  K  R  VD 
Sbjct: 507 --MMVTRWG----FSDLLGQVAYGENNEDVFLGMSMQRHQNVSEATAQTIDKEVRRLVDE 560

Query: 370 -------YLTVIFESNAEVSAELVEYYELTKDEI-EFLTNKTITKKILSVIAGKKPKVKK 421
                   LT  ++    ++  L+EY  L+ DEI + L  KT  ++  SV+    P+   
Sbjct: 561 GYTEAKRILTEKYDDLEALARGLLEYETLSGDEIVDLLDGKTPNRE--SVLEPSNPRGSA 618

Query: 422 ETPKKTEKP 430
               K  +P
Sbjct: 619 IPTTKRPRP 627