Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 636 a.a., ATP-dependent metalloprotease from Pseudomonas simiae WCS417

 Score = 48.9 bits (115), Expect = 5e-10
 Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 38/240 (15%)

Query: 12  SLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           +L DVAG ++ K+ + E +E +        +GG+  + +L+ GPPG+GKT LA AIA + 
Sbjct: 152 TLADVAGCDEAKEEVGELVEFLRDPGKFQRLGGRIPRGVLMVGPPGTGKTLLAKAIAGEA 211

Query: 64  AFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL-------- 109
                 ++ S     D +   VG  A+       ++      +I +DE+D +        
Sbjct: 212 KVPFFTISGS-----DFVEMFVGVGASRVRDMFEQAKKHAPCIIFIDEIDAVGRHRGAGM 266

Query: 110 -SGNDDRGGVAEIIKV----LKTAENPVILTAN---DVYKPALMTLRNSVNLINVGSVHT 161
             G+D+R      + V     +  +  +++ A    DV  PAL+        + VG    
Sbjct: 267 GGGHDEREQTLNQLLVEMDGFEMNDGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDI 326

Query: 162 NSIPPVLRRIALK--EGFEIDEKII-KMIASHSGGDLRAAINDLQSLATGGSIEIEDAKE 218
                +L+    K   G ++   +I +     SG DL   +N+    A      I + KE
Sbjct: 327 RGREQILKVHMRKVPMGDDVAPAVIARGTPGFSGADLANLVNEASLFAARTGKRIVEMKE 386