Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 430 a.a., Replication-associated recombination protein RarA from Variovorax sp. SCN45

 Score = 58.5 bits (140), Expect = 4e-13
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 13/212 (6%)

Query: 6   EKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAF 65
           E+ RP++L +V G        +    +   GQ    IL  GPPG+GKTT+A  +A+ +  
Sbjct: 11  ERLRPRTLGEVIGQQHLLGPGMSLRIAFESGQPHSCILW-GPPGTGKTTIARLMADAFDA 69

Query: 66  DVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDDRGGVAEIIKVL 125
             + ++A     KD+   V    A    LT +RT++ +DEV   + +     +  +   L
Sbjct: 70  QFLSISAVLGGVKDIREAVDLATAARDGLTQQRTIVFVDEVHRFNKSQQDAFLPHVESGL 129

Query: 126 -----KTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRRIALKEGFEID 180
                 T ENP     + +   A + +  S+N  ++  +       V R   ++    ID
Sbjct: 130 FTFIGATTENPSFEVNSALLSRAAVYVLQSLNEDDLKQI-------VTRAQDIQAVPAID 182

Query: 181 EKIIKMIASHSGGDLRAAINDLQSLATGGSIE 212
              +  + +++ GD R  +N L++LA     E
Sbjct: 183 TAAVDRLVAYADGDARRLLNTLETLAVAARAE 214