Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 430 a.a., replication-associated recombination protein A from Variovorax sp. OAS795

 Score = 55.1 bits (131), Expect = 5e-12
 Identities = 49/212 (23%), Positives = 91/212 (42%), Gaps = 13/212 (6%)

Query: 6   EKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAF 65
           E+ RPK+L +V G        +    +   GQ    IL  GPPG+GKTT+A  +A+ +  
Sbjct: 11  ERLRPKTLGEVIGQQHLLGPGMPLRIAFESGQPHSCILW-GPPGTGKTTIARLMADAFDA 69

Query: 66  DVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDDRGGVAEIIKVL 125
             + ++A     KD+   V    +    L  +RT++ +DEV   + +     +  +   L
Sbjct: 70  QFLSISAVLGGVKDIREAVERATSARDGLEQQRTIVFVDEVHRFNKSQQDAFLPHVESGL 129

Query: 126 -----KTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRRIALKEGFEID 180
                 T ENP     + +   A + +   +   ++  +       V +   ++    I+
Sbjct: 130 FTFIGATTENPSFEVNSALLSRAAVYVLQPLTEADLKQI-------VAKAQGIQAVPAIE 182

Query: 181 EKIIKMIASHSGGDLRAAINDLQSLATGGSIE 212
           E  I  + +++ GD R  +N L++LA     E
Sbjct: 183 ESAIDRLVAYADGDARRLLNTLETLAVAAKAE 214