Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 441 a.a., Replication-associated recombination protein A from Methylophilus sp. DMC18

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 21/212 (9%)

Query: 6   EKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAF 65
           E+ RPK+L++V G             +   G+    IL  GPPG GKTTLA  IA     
Sbjct: 17  EQLRPKTLSEVVGQTHLLGEGKPLRRAFESGKLPSMILW-GPPGVGKTTLARLIAQTADT 75

Query: 66  DVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLS-GNDD------RGGV 118
           + + L+A     KD I + V  A  +   TGR T++ +DEV   + G  D        G+
Sbjct: 76  EFVPLSAVLSGIKD-IREAVERAELTLQQTGRNTILFVDEVHRFNKGQQDAFLPYVESGL 134

Query: 119 AEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRRIALK--EG 176
              I    T ENP     + +   A + + N++N         + +  +L R  LK    
Sbjct: 135 ITFIGA--TTENPSFEVNSALLSRAQVFVLNALN--------EDELAQLLERARLKVAPA 184

Query: 177 FEIDEKIIKMIASHSGGDLRAAINDLQSLATG 208
             +DE + + + +++ GD R  +N  + L  G
Sbjct: 185 VALDETVQEQVLAYADGDARRLLNFAEGLFNG 216