Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 315 a.a., replication factor C small subunit from Methanococcus maripaludis S2

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 13/209 (6%)

Query: 4   WVEKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           WVEKYRP++L++V GH++  + L  ++E     ++   +L +G PG GKTT A A+A D 
Sbjct: 5   WVEKYRPETLSEVVGHHEIIKRLTNYVEK----KSMPHLLFSGSPGVGKTTAALALAKDL 60

Query: 64  AFDV-----IELNASDKRNKDVISQVVGTAATSKSL-TGRRTLIVLDEVDGLSGNDDRGG 117
             D      +ELN+SD+R  DVI   V   A +K +      +I LDE D L+ +     
Sbjct: 61  YGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNAL 120

Query: 118 VAEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRRIALKEGF 177
              + K         IL+ N   K  +  +++   +     + T  +   L+ I+ KE  
Sbjct: 121 RRTMEKYSDICR--FILSCNYPSK-IIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENL 177

Query: 178 EIDEKIIKMIASHSGGDLRAAINDLQSLA 206
            +++  I  I   S GD+R AIN LQ+ A
Sbjct: 178 NLEKGGIDAIIYVSEGDMRKAINVLQTAA 206