Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 447 a.a., recombination protein (NCBI) from Escherichia coli BW25113

 Score = 51.6 bits (122), Expect = 5e-11
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 8/176 (4%)

Query: 42  ILLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLI 101
           ++L GPPG+GKTTLA  IA     DV  ++A     K+ I + +  A  +++  GRRT++
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKE-IREAIERARQNRN-AGRRTIL 110

Query: 102 VLDEVDGLSGNDDRGGV-----AEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINV 156
            +DEV   + +     +       I  +  T ENP     + +   A + L  S++  ++
Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDI 170

Query: 157 GSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLATGGSIE 212
             V T ++    R     +   + ++  + IA    GD R A+N L+ +A    ++
Sbjct: 171 EQVLTQAMEDKTRGYG-GQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVD 225