Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 429 a.a., replication-associated recombination protein A from Erwinia tracheiphila SCR3

 Score = 50.8 bits (120), Expect = 9e-11
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 9/216 (4%)

Query: 9   RPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDYAFDVI 68
           RP++L +  G      A      +I  G     IL  GPPG+GKTTLA  IA+ YA+  +
Sbjct: 2   RPRTLVEYIGQQHLLAAGKPLPRAIEAGHLHSMILW-GPPGTGKTTLAEIIAH-YAYAGV 59

Query: 69  ELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDDRGGV-----AEIIK 123
           E  ++       I + +  A  ++   G RT++ +DEV   + +     +       I  
Sbjct: 60  ERISAVTSGVKEIREAIERARQNRD-AGHRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 118

Query: 124 VLKTAENPVILTANDVYKPALMTLRNSVNLINVGSVHTNSIPPVLRRIALKEGFEIDEKI 183
           +  T ENP     + +   A + L  S+    + +V   ++    R     E   +  + 
Sbjct: 119 IGATTENPSFELNSALLSRARVYLLKSLTSEEIEAVLGQAMQDKERGYG-NENIRLPAET 177

Query: 184 IKMIASHSGGDLRAAINDLQSLATGGSIEIEDAKEL 219
            K +A+   GD R A+N L+ +A    +     +EL
Sbjct: 178 CKTVAALVNGDARRALNTLEMMADMAEVNSTGEREL 213