Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 447 a.a., replication-associated recombination protein RarA from Escherichia coli ECRC62

 Score = 50.8 bits (120), Expect = 9e-11
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 42  ILLAGPPGSGKTTLAYAIANDYAFDVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLI 101
           ++L GPPG+GKTTLA  IA     DV  ++A     K+ I + +  A  +++  GRRT++
Sbjct: 53  MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKE-IREAIERARQNRN-AGRRTIL 110

Query: 102 VLDEVDGLSGNDDRGGV-----AEIIKVLKTAENPVILTANDVYKPALMTLRNSVNLINV 156
            +DEV   + +     +       I  +  T ENP     + +   A + L  S+   ++
Sbjct: 111 FVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLGTEDI 170

Query: 157 GSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLA 206
             V T ++    R     +   + ++  + IA    GD R A+N L+ +A
Sbjct: 171 EQVLTQAMEDKTRGYG-GQDIVLPDETRRAIAELVNGDARRALNTLEMMA 219