Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 573 a.a., DNA polymerase III, subunit gamma and tau from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 48.1 bits (113), Expect = 8e-10
 Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 43/239 (17%)

Query: 1   MEEWV---EKYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAY 57
           ME +V    KYRP +   V G       L   I++       +  L  GP G GKTT A 
Sbjct: 1   MENFVVSARKYRPSNFKSVVGQQHITTTLKNAIKN---NHLAQAFLFCGPRGVGKTTCAR 57

Query: 58  AIA-------------------------NDYAFDVIELNASDKRNKDVISQVVGTAATSK 92
            +A                          + +F+V EL+A+   + D I  +V     + 
Sbjct: 58  ILAKTINCENLSDDFEACNECESCKAFNTNSSFNVHELDAASNNSVDDIRNLVDQVRYAP 117

Query: 93  SLTGRRTLIVLDEVDGLSGNDDRGGVAEIIKVLKTAENP----VILTANDVYKPALMTLR 148
              G   + ++DEV  LS              LKT E P    + + A       + T+ 
Sbjct: 118 Q-KGSYKIYIIDEVHMLS-------TQAFNAFLKTLEEPPKYAIFILATTEKHKIIPTIL 169

Query: 149 NSVNLINVGSVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAINDLQSLAT 207
           +   + +   +    I   L+ IA +E    +++ +++IA+ + G LR A++    + T
Sbjct: 170 SRCQIFDFNRIQIKDIAEHLKYIASEEDISYEDEALRLIAAKADGALRDALSIFDLIVT 228