Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 648 a.a., metalloprotease from Agrobacterium fabrum C58

 Score = 54.7 bits (130), Expect = 1e-11
 Identities = 70/292 (23%), Positives = 123/292 (42%), Gaps = 43/292 (14%)

Query: 12  SLNDVAGHNKTKQALIEWIESI--------IGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           + +DVAG ++ KQ L E +E +        +GG+  + +LL GPPG+GKT LA ++A + 
Sbjct: 156 TFDDVAGVDEAKQDLEEIVEFLRDPQKFQRLGGKIPRGVLLVGPPGTGKTLLARSVAGEA 215

Query: 64  AFDVIELNASDKRNKDVISQVVGTAAT------SKSLTGRRTLIVLDEVDGL-------- 109
                 ++ S     D +   VG  A+       ++      +I +DE+D +        
Sbjct: 216 NVPFFTISGS-----DFVEMFVGVGASRVRDMFEQAKKNAPCIIFIDEIDAVGRHRGAGL 270

Query: 110 -SGNDDRGGVAEIIKV----LKTAENPVILTAN---DVYKPALM---TLRNSVNLINVGS 158
             GND+R      + V     +  E  +++ A    DV  PAL+        V + N   
Sbjct: 271 GGGNDEREQTLNQLLVEMDGFEANEGIILIAATNRPDVLDPALLRPGRFDRQVVVPNPDI 330

Query: 159 VHTNSIPPV-LRRIALKEGFEIDEKII-KMIASHSGGDLRAAINDLQSLATGGSIEIEDA 216
           V    I  V +R + L     +D KI+ +     SG DL   +N+   +A   +  +   
Sbjct: 331 VGRERILKVHVRNVPLAP--NVDLKILARGTPGFSGADLMNLVNEAALMAARRNKRVVTM 388

Query: 217 KELPDRDSEKSIFDAMRIIMKTTHYDIATSATRDVKEDIGTIEEWISENLPK 268
           +E  D   +K +  A R     T  +   +A  +    I  ++  +++ L K
Sbjct: 389 QEFEDA-KDKIMMGAERRSSAMTEAEKKLTAYHEAGHAITALKVAVADPLHK 439