Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 438 a.a., ATPase, AAA family protein from Agrobacterium fabrum C58

 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 46/201 (22%), Positives = 96/201 (47%), Gaps = 18/201 (8%)

Query: 6   EKYRPKSLNDVAG--HNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIANDY 63
           ++ RPK+L++V+G  H   ++ ++     +I   +   ++  GPPG+GKTT+A  ++ + 
Sbjct: 22  DRLRPKTLSEVSGQPHLTGEEGVLR---RMIDSGSLGSMIFWGPPGTGKTTVARLLSGEA 78

Query: 64  AFDVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIVLDEVDGLSGNDDRGGVAEIIK 123
                +++A      D+  + V  AA ++ + GR+TL+ +DE+       +R      + 
Sbjct: 79  GLAFEQISAIFSGVADL--KKVFEAARTRRMNGRQTLLFVDEIHRF----NRAQQDSFLP 132

Query: 124 VLKTAENPVILTANDVYKPAL---MTLRNSVNLINVGSVHTNSIPPVLRRIALKEG--FE 178
           V++  +  +IL       P+      L +   ++  GS   +S+  +L+R    EG    
Sbjct: 133 VME--DGTIILVGATTENPSFELNAALLSRARVLTFGSHDEDSLSELLKRAEEAEGKPLP 190

Query: 179 IDEKIIKMIASHSGGDLRAAI 199
           + E+    +   + GD RA +
Sbjct: 191 LTEEARASLLRMADGDGRAVL 211