Pairwise Alignments

Query, 486 a.a., replication factor C large subunit from Methanococcus maripaludis S2

Subject, 721 a.a., Holliday junction ATP-dependent DNA helicase RuvB from Acinetobacter radioresistens SK82

 Score = 54.7 bits (130), Expect = 1e-11
 Identities = 104/486 (21%), Positives = 194/486 (39%), Gaps = 98/486 (20%)

Query: 7   KYRPKSLNDVAGHNKTKQALIEWIESIIGGQNQKPILLAGPPGSGKTTLAYAIA------ 60
           KYRP++ N++ G +   +AL   +E    G+     L  G  G GKTT+A  +A      
Sbjct: 8   KYRPRNFNELVGQSHVSRALTNALER---GRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64

Query: 61  -----------------NDYAF-DVIELNASDKRNKDVISQVVGTAATSKSLTGRRTLIV 102
                            N+  F D+IE++A+ +   +   +++     + +  GR  + +
Sbjct: 65  TGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPT-QGRFKVYL 123

Query: 103 LDEVDGLSGNDDRGGVAEIIKVLKTAENP-----VILTANDVYKPALMTLRNSVNLINVG 157
           +DEV  LS +           +LKT E P      +    D  K  +  +   +    + 
Sbjct: 124 IDEVHMLSTHSFNA-------LLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQ-FTLR 175

Query: 158 SVHTNSIPPVLRRIALKEGFEIDEKIIKMIASHSGGDLRAAIN-DLQSLATG-GSIEIED 215
            +  + I   L RI  KE    D   I  I   + G LR A++   Q++A G G +  +D
Sbjct: 176 PLAVDEITEHLTRILQKEEINADSDAIWQIGESAQGSLRDALSLTDQAIAYGQGEVHHQD 235

Query: 216 AKELPDRDSEKSIFDAM------------RIIMKTTHYDIATSATRDVKEDIGTIEEW-I 262
            KE+        I+D +            +++++  H  +  S   D  + I T+ E  +
Sbjct: 236 VKEMLGLIDRTIIYDLILAIHQNNQARVSQLLLQFRHQALDVSLVLD--QLISTLHELAL 293

Query: 263 SENLPKEYLKYKDLAEGYDYLSKSDVFLGRVYRRQYFGLWRYASALMTAGTALAKEEKYR 322
            + LP   LKY       D +++  + L R+   Q   L+   +    A   L+  ++ +
Sbjct: 294 LQYLPDLGLKYS------DEINRKILQLSRLISAQDLQLYYQIACKGRADLQLSVTQE-Q 346

Query: 323 GFTRYGPPAIFTKLSRTKGSRQKMKDILKKIALKTHTSTKRARNTVDYL-TVIFESNAEV 381
           GF                        IL+ +A +     +    ++DY    + +S++  
Sbjct: 347 GFEMC---------------------ILRLLAFRPLAPDE---ISIDYSGQAVPDSSSSA 382

Query: 382 SAELVEYYELTKDEIEFLTNK------TITKKILSVIAGKKPKVKKETPKKTEKPKEVMP 435
           SAE+     L++ ++  L  K       I++++L  +AG +P    +T   + +P E  P
Sbjct: 383 SAEVNTAPHLSEPQVTVLAEKFEPETNFISEELL--LAGAEPDTVPKTTADSSEPFEKKP 440

Query: 436 IIPKRP 441
           + P  P
Sbjct: 441 LEPAVP 446