Pairwise Alignments

Query, 282 a.a., PQQ-binding-like beta-propeller repeat protein from Methanococcus maripaludis S2

Subject, 393 a.a., outer membrane protein assembly factor BamB from Dickeya dianthicola ME23

 Score = 47.0 bits (110), Expect = 7e-10
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 24/162 (14%)

Query: 107 EDILYVTSLDGHLYAINPDGTEKWRFKTNDAITSAAS----IGKDGTIY----FGSDKVY 158
           ED++ ++ L        P  T+ W     D I    S    I +D  +Y     G+ K  
Sbjct: 27  EDVVKMSPLPQVTNQFTP--TKVWSRSVGDGIGEFYSNLHPIWQDSRVYAADRHGTVKAL 84

Query: 159 AINPDGTEKWNF----YAGYWTVTRPAISEDGT------IYVTSLDGHLYAINPD-GTEK 207
            +N  G EKW        G  +  RPA+   G       +YV S    L+A+N D GT +
Sbjct: 85  DLN-SGEEKWRADLAEKTGLLSSNRPALLSGGVAVSGNHVYVGSERAQLFALNADDGTLQ 143

Query: 208 WRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN-PDGTEKW 248
           W+ K    + SSPV+ +   I   S +G L A++  DGT KW
Sbjct: 144 WQTKVAGEVLSSPVVSDGMVIIHTS-NGMLQALSESDGTIKW 184



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 13/111 (11%)

Query: 182 ISEDGTIYVTSLDGHLYAINPD-GTEKWRF----KTGKRIESSP------VIGNTDTIYF 230
           I +D  +Y     G + A++ + G EKWR     KTG    + P      V  + + +Y 
Sbjct: 66  IWQDSRVYAADRHGTVKALDLNSGEEKWRADLAEKTGLLSSNRPALLSGGVAVSGNHVYV 125

Query: 231 GSYDGHLYAINPD-GTEKWNFETGSWIIATPAIDENGTIYFGTRNGKFYAL 280
           GS    L+A+N D GT +W  +    ++++P + + G +   T NG   AL
Sbjct: 126 GSERAQLFALNADDGTLQWQTKVAGEVLSSPVVSD-GMVIIHTSNGMLQAL 175



 Score = 35.4 bits (80), Expect = 2e-06
 Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 37/220 (16%)

Query: 56  KSGEIIECKPSIGKDGT------IYFGSDK--VYAINPD-GTEKWRFDTKKAIVSDFTIF 106
           K+G +   +P++   G       +Y GS++  ++A+N D GT +W+      ++S   + 
Sbjct: 100 KTGLLSSNRPALLSGGVAVSGNHVYVGSERAQLFALNADDGTLQWQTKVAGEVLSSPVVS 159

Query: 107 EDILYVTSLDGHLYAIN-PDGTEKWRFKTNDAITS----AASIGKDGTIYFGSD--KVYA 159
           + ++ + + +G L A++  DGT KW    +    S    +A     G    G D  +V A
Sbjct: 160 DGMVIIHTSNGMLQALSESDGTIKWTVNLDMPSLSLRGESAPTAAFGAAIVGGDNGRVSA 219

Query: 160 I--------------NPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDG 204
           +               P G  +    A    V    +     +Y    +G+L A++   G
Sbjct: 220 VMINQGQLIWQQRISQPGGATE---IARLNDVDTTPVVASNVVYALGYNGNLTALDLRSG 276

Query: 205 TEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDG 244
              W+ + G     +  I + D IY    D  + A+N +G
Sbjct: 277 QITWKREIG---SVNDFIVDGDRIYLVDQDDRITALNTNG 313



 Score = 35.4 bits (80), Expect = 2e-06
 Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 60/273 (21%)

Query: 7   NDCKIKWEFLIGNSIDSSPILAKNGTIYLGSSNKNLYAINP-DGSVKWFFKSGEIIECKP 65
           +D  ++W+  +   + SSP+++ +G + + +SN  L A++  DG++KW           P
Sbjct: 138 DDGTLQWQTKVAGEVLSSPVVS-DGMVIIHTSNGMLQALSESDGTIKWTVNLD-----MP 191

Query: 66  SIGKDG----TIYFGSDKVYAIN--------PDGTEKWR-------FDTKKAIVSDF--- 103
           S+   G    T  FG+  V   N          G   W+         T+ A ++D    
Sbjct: 192 SLSLRGESAPTAAFGAAIVGGDNGRVSAVMINQGQLIWQQRISQPGGATEIARLNDVDTT 251

Query: 104 -TIFEDILYVTSLDGHLYAINPDGTEKWRFKTNDAITSAASIGKDGTIYFGSDKVYAINP 162
             +  +++Y    +G+L A++           +  IT    IG         D++Y ++ 
Sbjct: 252 PVVASNVVYALGYNGNLTALD---------LRSGQITWKREIGSVNDFIVDGDRIYLVDQ 302

Query: 163 DG-TEKWNFYAG----------YWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFK 211
           D      N   G          +  +T PA+  +G + V   +G+L+ +N   T   RF 
Sbjct: 303 DDRITALNTNGGVVIWRQGDLLHRNLTAPAL-YNGYLVVGDAEGYLHWVN---TTDGRFV 358

Query: 212 TGKRIE-----SSPVIGNTDTIYFGSYDGHLYA 239
             ++++     S PV+  +D +   + DG +YA
Sbjct: 359 VQQKVDGSGLLSKPVVA-SDKLLVQAKDGEVYA 390



 Score = 31.2 bits (69), Expect = 4e-05
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)

Query: 23  SSPILAKNGTIYLGSSNKNLYAIN-PDGSVKWFFK-SGEIIECKPSIGKDG--TIYFGSD 78
           S  +      +Y+GS    L+A+N  DG+++W  K +GE++     +  DG   I+  + 
Sbjct: 113 SGGVAVSGNHVYVGSERAQLFALNADDGTLQWQTKVAGEVL--SSPVVSDGMVIIHTSNG 170

Query: 79  KVYAIN-PDGTEKW 91
            + A++  DGT KW
Sbjct: 171 MLQALSESDGTIKW 184