Pairwise Alignments

Query, 360 a.a., hydrogenase formation protein HypD from Methanococcus maripaludis S2

Subject, 379 a.a., hydrogenase formation protein HypD from Magnetospirillum magneticum AMB-1

 Score =  290 bits (743), Expect = 3e-83
 Identities = 156/362 (43%), Positives = 218/362 (60%), Gaps = 13/362 (3%)

Query: 12  ELIKKSIQTIQKLSEKLDEVKIMHVCGSHEHTICKYGIRDVLPDNITVVPGPGCPVCVTT 71
           E+ +   Q I+  ++      IM  CG H H I +YG+ D+LP N+ ++ GPGCPVCV  
Sbjct: 11  EVAQSIAQAIKAEADPGSTYHIMEFCGGHTHAISRYGLEDLLPANVRMIHGPGCPVCVLP 70

Query: 72  QKEIDKAMYLAEQ-GYTIATLGDMYRVPGSKK-SLMQLQSEGADVKIVYGIGDAVKLAKK 129
              ID A++LA+Q G T+ T GDM RVPGSK+ SL++ ++EGADV++VY   DA+KLA+ 
Sbjct: 71  VGRIDAAIWLAKQPGVTLVTYGDMLRVPGSKRLSLLKAKAEGADVRMVYSTLDAIKLAQA 130

Query: 130 Q-DEKVVFVAIGFETTAPTTAAELLNKP----ENFYILNSHRQTPPVMGFLLGGGT---- 180
             D +VVF AIGFETT P TA  +        +NF +  +H  TP  +  +L        
Sbjct: 131 NPDRQVVFFAIGFETTTPPTAVAIKQAQALDLKNFSVFCNHVLTPSAITQILDSPEVREL 190

Query: 181 -SLNLDGFICPGHVSTITGLKPYYDPCKTYHAPMVVAGFEPIDVMASIVMILKQLVNGEA 239
            ++ LD FI P HVSTI G +PY    + Y  P+V+AGFEP+DVM ++ M+++Q+ +G  
Sbjct: 191 GTVKLDAFIGPAHVSTIIGSRPYEYFAEEYQRPVVIAGFEPLDVMQAVRMLVRQINDGRF 250

Query: 240 KVENEYTRGVREEGNVIAQKIMNKVFEPADV-AWRGFPVIKDGGMKLREEFKKYDVHENI 298
           +VENE+ R V  +GN  A+ ++  +FE      WRG  ++    ++L+E +  +D     
Sbjct: 251 EVENEFARAVTRDGNEKAKSLVADMFELRRAFEWRGLGLVPYSALRLKEPYAAWDAERRW 310

Query: 299 DVPDIKETINKACICSEILRGEKLPHDCKLFGKTCDPMNPVGSCMVSDEGTCRIFYKYSK 358
           DVP      NKAC C  ILRG K P DCKLFG  C P NP+GSCMVS EG C   + Y +
Sbjct: 311 DVPQDSPPDNKACECGAILRGVKKPTDCKLFGTVCTPENPMGSCMVSAEGACAAHWTYGR 370

Query: 359 FR 360
           FR
Sbjct: 371 FR 372