Pairwise Alignments

Query, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 405 a.a., hypothetical protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 53.5 bits (127), Expect = 9e-12
 Identities = 31/166 (18%), Positives = 76/166 (45%)

Query: 23  QKSKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECF 82
           +++K++  +G  L+      +++  Y  AL   P    I  N G +  +LG + E+    
Sbjct: 9   EQAKAFFFEGNTLFEADRLDEALGRYQAALALVPGRPSILANLGVTQCRLGRWPEAVATL 68

Query: 83  DKALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQR 142
            +A   DP + +A+  LG       N+  A +   + + + +   +   +  + L  ++R
Sbjct: 69  AQATKADPTHRDAWIALGLSHEALSNWAAAADALQQGVRLGASTPQLHLSLAMCLLRLER 128

Query: 143 YSEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKAL 188
             EA+   D++++++   ++ W  +G    + G+  ++   + +AL
Sbjct: 129 PGEALRSLDQALALDPTLAEAWSQRGSLMREAGQLAEAARCFEQAL 174



 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 34/201 (16%)

Query: 124 SENSEAWKNKGITLNNMQRYSEAIDCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDS 183
           +E ++A+  +G TL    R  EA+  +  ++++      +  N G TQ +LG + +++ +
Sbjct: 8   TEQAKAFFFEGNTLFEADRLDEALGRYQAALALVPGRPSILANLGVTQCRLGRWPEAVAT 67

Query: 184 YNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTE 243
             +A   D     A +  G S+  L N+ +A                     ADA +   
Sbjct: 68  LAQATKADPTHRDAWIALGLSHEALSNWAAA---------------------ADALQ--- 103

Query: 244 NFEYALKYYDEALEINPSNSDILISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILK 303
                     + + +  S   + +S  +CL +++    A+ + D A+ LDP   + W  +
Sbjct: 104 ----------QGVRLGASTPQLHLSLAMCLLRLERPGEALRSLDQALALDPTLAEAWSQR 153

Query: 304 GNSYVGLKDYESSISCYKKAL 324
           G+          +  C+++AL
Sbjct: 154 GSLMREAGQLAEAARCFEQAL 174



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 1/169 (0%)

Query: 89  DP-ENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWKNKGITLNNMQRYSEAI 147
           DP E ++AF   G  L +     +AL  Y  +L +         N G+T   + R+ EA+
Sbjct: 6   DPTEQAKAFFFEGNTLFEADRLDEALGRYQAALALVPGRPSILANLGVTQCRLGRWPEAV 65

Query: 148 DCFDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETALLGKGNSYLK 207
               ++   +  + D W   G +   L  +  + D+  + + +        L      L+
Sbjct: 66  ATLAQATKADPTHRDAWIALGLSHEALSNWAAAADALQQGVRLGASTPQLHLSLAMCLLR 125

Query: 208 LQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEAL 256
           L+    A+   + A  ++P        +    R+      A + +++AL
Sbjct: 126 LERPGEALRSLDQALALDPTLAEAWSQRGSLMREAGQLAEAARCFEQAL 174



 Score = 38.1 bits (87), Expect = 4e-07
 Identities = 18/94 (19%), Positives = 44/94 (46%)

Query: 233 YYKADAYRDTENFEYALKYYDEALEINPSNSDILISKGICLDKMKNYSAAISNFDLAIQL 292
           +++ +   + +  + AL  Y  AL + P    IL + G+   ++  +  A++    A + 
Sbjct: 15  FFEGNTLFEADRLDEALGRYQAALALVPGRPSILANLGVTQCRLGRWPEAVATLAQATKA 74

Query: 293 DPKNVQIWILKGNSYVGLKDYESSISCYKKALEI 326
           DP +   WI  G S+  L ++ ++    ++ + +
Sbjct: 75  DPTHRDAWIALGLSHEALSNWAAAADALQQGVRL 108